Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-135]:
1mj5a_PU0_1-135
CI=4.00


[136-221]:
1mj5a_PU0_136-221
CI=1.89


[222-297 ]:
1mj5a_PU0_222-297
CI=2.18


Level 1
PU
Molecule needs Java 1.4 Structure


[1-135]:
1mj5a_PU1_1-135
CI=4.00


[136-151]:
1mj5a_PU1_136-151
CI=0.11


[152-208]:
1mj5a_PU1_152-208
CI=1.93


[209-221]:
1mj5a_PU1_209-221
CI=1.24


[222-297 ]:
1mj5a_PU1_222-297
CI=2.18


Level 2
PU
Molecule needs Java 1.4 Structure


[1-135]:
1mj5a_PU2_1-135
CI=4.00


[136-151]:
1mj5a_PU2_136-151
CI=0.11


[152-208]:
1mj5a_PU2_152-208
CI=1.93


[209-221]:
1mj5a_PU2_209-221
CI=1.24


[222-281]:
1mj5a_PU2_222-281
CI=2.50


[282-297 ]:
1mj5a_PU2_282-297
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-97]:
1mj5a_PU3_1-97
CI=3.24


[98-135]:
1mj5a_PU3_98-135
CI=3.11


[136-151]:
1mj5a_PU3_136-151
CI=0.11


[152-208]:
1mj5a_PU3_152-208
CI=1.93


[209-221]:
1mj5a_PU3_209-221
CI=1.24


[222-281]:
1mj5a_PU3_222-281
CI=2.50


[282-297 ]:
1mj5a_PU3_282-297
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-70]:
1mj5a_PU4_1-70
CI=4.03


[71-97]:
1mj5a_PU4_71-97
CI=0.00


[98-135]:
1mj5a_PU4_98-135
CI=3.11


[136-151]:
1mj5a_PU4_136-151
CI=0.11


[152-208]:
1mj5a_PU4_152-208
CI=1.93


[209-221]:
1mj5a_PU4_209-221
CI=1.24


[222-281]:
1mj5a_PU4_222-281
CI=2.50


[282-297 ]:
1mj5a_PU4_282-297
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-25]:
1mj5a_PU5_1-25
CI=1.74


[26-60]:
1mj5a_PU5_26-60
CI=3.15


[61-70]:
1mj5a_PU5_61-70
CI=1.08


[71-97]:
1mj5a_PU5_71-97
CI=0.00


[98-135]:
1mj5a_PU5_98-135
CI=3.11


[136-151]:
1mj5a_PU5_136-151
CI=0.11


[152-208]:
1mj5a_PU5_152-208
CI=1.93


[209-221]:
1mj5a_PU5_209-221
CI=1.24


[222-281]:
1mj5a_PU5_222-281
CI=2.50


[282-297 ]:
1mj5a_PU5_282-297
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-25]:
1mj5a_PU6_1-25
CI=1.74


[26-60]:
1mj5a_PU6_26-60
CI=3.15


[61-70]:
1mj5a_PU6_61-70
CI=1.08


[71-97]:
1mj5a_PU6_71-97
CI=0.00


[98-135]:
1mj5a_PU6_98-135
CI=3.11


[136-151]:
1mj5a_PU6_136-151
CI=0.11


[152-208]:
1mj5a_PU6_152-208
CI=1.93


[209-221]:
1mj5a_PU6_209-221
CI=1.24


[222-260]:
1mj5a_PU6_222-260
CI=0.86


[261-281]:
1mj5a_PU6_261-281
CI=0.89


[282-297 ]:
1mj5a_PU6_282-297
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-25]:
1mj5a_PU7_1-25
CI=1.74


[26-60]:
1mj5a_PU7_26-60
CI=3.15


[61-70]:
1mj5a_PU7_61-70
CI=1.08


[71-97]:
1mj5a_PU7_71-97
CI=0.00


[98-135]:
1mj5a_PU7_98-135
CI=3.11


[136-151]:
1mj5a_PU7_136-151
CI=0.11


[152-208]:
1mj5a_PU7_152-208
CI=1.93


[209-221]:
1mj5a_PU7_209-221
CI=1.24


[222-243]:
1mj5a_PU7_222-243
CI=0.00


[244-260]:
1mj5a_PU7_244-260
CI=0.31


[261-281]:
1mj5a_PU7_261-281
CI=0.89


[282-297 ]:
1mj5a_PU7_282-297
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-25]:
1mj5a_PU8_1-25
CI=1.74


[26-60]:
1mj5a_PU8_26-60
CI=3.15


[61-70]:
1mj5a_PU8_61-70
CI=1.08


[71-97]:
1mj5a_PU8_71-97
CI=0.00


[98-135]:
1mj5a_PU8_98-135
CI=3.11


[136-151]:
1mj5a_PU8_136-151
CI=0.11


[152-181]:
1mj5a_PU8_152-181
CI=0.68


[182-208]:
1mj5a_PU8_182-208
CI=0.41


[209-221]:
1mj5a_PU8_209-221
CI=1.24


[222-243]:
1mj5a_PU8_222-243
CI=0.00


[244-260]:
1mj5a_PU8_244-260
CI=0.31


[261-281]:
1mj5a_PU8_261-281
CI=0.89


[282-297 ]:
1mj5a_PU8_282-297
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-25]:
1mj5a_PU9_1-25
CI=1.74


[26-44]:
1mj5a_PU9_26-44
CI=0.87


[45-60]:
1mj5a_PU9_45-60
CI=0.56


[61-70]:
1mj5a_PU9_61-70
CI=1.08


[71-97]:
1mj5a_PU9_71-97
CI=0.00


[98-135]:
1mj5a_PU9_98-135
CI=3.11


[136-151]:
1mj5a_PU9_136-151
CI=0.11


[152-181]:
1mj5a_PU9_152-181
CI=0.68


[182-208]:
1mj5a_PU9_182-208
CI=0.41


[209-221]:
1mj5a_PU9_209-221
CI=1.24


[222-243]:
1mj5a_PU9_222-243
CI=0.00


[244-260]:
1mj5a_PU9_244-260
CI=0.31


[261-281]:
1mj5a_PU9_261-281
CI=0.89


[282-297 ]:
1mj5a_PU9_282-297
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-25]:
1mj5a_PU_1-25
CI=1.74


[26-44]:
1mj5a_PU_26-44
CI=0.87


[45-60]:
1mj5a_PU_45-60
CI=0.56


[61-70]:
1mj5a_PU_61-70
CI=1.08


[71-97]:
1mj5a_PU_71-97
CI=0.00


[98-114]:
1mj5a_PU_98-114
CI=0.64


[115-135]:
1mj5a_PU_115-135
CI=0.18


[136-151]:
1mj5a_PU_136-151
CI=0.11


[152-181]:
1mj5a_PU_152-181
CI=0.68


[182-208]:
1mj5a_PU_182-208
CI=0.41


[209-221]:
1mj5a_PU_209-221
CI=1.24


[222-243]:
1mj5a_PU_222-243
CI=0.00


[244-260]:
1mj5a_PU_244-260
CI=0.31


[261-281]:
1mj5a_PU_261-281
CI=0.89


[282-297 ]:
1mj5a_PU_282-297
CI=0.00