Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-47]:
1mkka_PU0_1-47
CI=2.18


[48-93 ]:
1mkka_PU0_48-93
CI=3.40


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1mkka_PU1_1-20
CI=0.00


[21-47]:
1mkka_PU1_21-47
CI=0.70


[48-93 ]:
1mkka_PU1_48-93
CI=3.40


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-20]:
1mkka_PU_1-20
CI=0.00


[21-47]:
1mkka_PU_21-47
CI=0.70


[48-64]:
1mkka_PU_48-64
CI=0.10


[65-93 ]:
1mkka_PU_65-93
CI=1.45