Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-140]:
1ml4a_PU0_1-140
CI=3.47


[141-289]:
1ml4a_PU0_141-289
CI=3.64


[290-307 ]:
1ml4a_PU0_290-307
CI=0.11


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1ml4a_PU1_1-18
CI=0.10


[19-38]:
1ml4a_PU1_19-38
CI=0.28


[39-140]:
1ml4a_PU1_39-140
CI=3.83


[141-289]:
1ml4a_PU1_141-289
CI=3.64


[290-307 ]:
1ml4a_PU1_290-307
CI=0.11


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1ml4a_PU2_1-18
CI=0.10


[19-38]:
1ml4a_PU2_19-38
CI=0.28


[39-140]:
1ml4a_PU2_39-140
CI=3.83


[141-229]:
1ml4a_PU2_141-229
CI=3.40


[230-245]:
1ml4a_PU2_230-245
CI=0.35


[246-289]:
1ml4a_PU2_246-289
CI=1.83


[290-307 ]:
1ml4a_PU2_290-307
CI=0.11


Level 3
PU
Molecule needs Java 1.4 Structure


[1-18]:
1ml4a_PU3_1-18
CI=0.10


[19-38]:
1ml4a_PU3_19-38
CI=0.28


[39-76]:
1ml4a_PU3_39-76
CI=2.61


[77-96]:
1ml4a_PU3_77-96
CI=0.36


[97-140]:
1ml4a_PU3_97-140
CI=3.39


[141-229]:
1ml4a_PU3_141-229
CI=3.40


[230-245]:
1ml4a_PU3_230-245
CI=0.35


[246-289]:
1ml4a_PU3_246-289
CI=1.83


[290-307 ]:
1ml4a_PU3_290-307
CI=0.11


Level 4
PU
Molecule needs Java 1.4 Structure


[1-18]:
1ml4a_PU4_1-18
CI=0.10


[19-38]:
1ml4a_PU4_19-38
CI=0.28


[39-76]:
1ml4a_PU4_39-76
CI=2.61


[77-96]:
1ml4a_PU4_77-96
CI=0.36


[97-140]:
1ml4a_PU4_97-140
CI=3.39


[141-160]:
1ml4a_PU4_141-160
CI=0.46


[161-212]:
1ml4a_PU4_161-212
CI=2.49


[213-229]:
1ml4a_PU4_213-229
CI=0.00


[230-245]:
1ml4a_PU4_230-245
CI=0.35


[246-289]:
1ml4a_PU4_246-289
CI=1.83


[290-307 ]:
1ml4a_PU4_290-307
CI=0.11


Level 5
PU
Molecule needs Java 1.4 Structure


[1-18]:
1ml4a_PU5_1-18
CI=0.10


[19-38]:
1ml4a_PU5_19-38
CI=0.28


[39-76]:
1ml4a_PU5_39-76
CI=2.61


[77-96]:
1ml4a_PU5_77-96
CI=0.36


[97-140]:
1ml4a_PU5_97-140
CI=3.39


[141-160]:
1ml4a_PU5_141-160
CI=0.46


[161-212]:
1ml4a_PU5_161-212
CI=2.49


[213-229]:
1ml4a_PU5_213-229
CI=0.00


[230-245]:
1ml4a_PU5_230-245
CI=0.35


[246-263]:
1ml4a_PU5_246-263
CI=0.10


[264-289]:
1ml4a_PU5_264-289
CI=1.01


[290-307 ]:
1ml4a_PU5_290-307
CI=0.11


Level 6
PU
Molecule needs Java 1.4 Structure


[1-18]:
1ml4a_PU6_1-18
CI=0.10


[19-38]:
1ml4a_PU6_19-38
CI=0.28


[39-76]:
1ml4a_PU6_39-76
CI=2.61


[77-96]:
1ml4a_PU6_77-96
CI=0.36


[97-140]:
1ml4a_PU6_97-140
CI=3.39


[141-160]:
1ml4a_PU6_141-160
CI=0.46


[161-179]:
1ml4a_PU6_161-179
CI=0.19


[180-212]:
1ml4a_PU6_180-212
CI=1.95


[213-229]:
1ml4a_PU6_213-229
CI=0.00


[230-245]:
1ml4a_PU6_230-245
CI=0.35


[246-263]:
1ml4a_PU6_246-263
CI=0.10


[264-289]:
1ml4a_PU6_264-289
CI=1.01


[290-307 ]:
1ml4a_PU6_290-307
CI=0.11


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1ml4a_PU7_1-18
CI=0.10


[19-38]:
1ml4a_PU7_19-38
CI=0.28


[39-76]:
1ml4a_PU7_39-76
CI=2.61


[77-96]:
1ml4a_PU7_77-96
CI=0.36


[97-122]:
1ml4a_PU7_97-122
CI=1.00


[123-140]:
1ml4a_PU7_123-140
CI=1.23


[141-160]:
1ml4a_PU7_141-160
CI=0.46


[161-179]:
1ml4a_PU7_161-179
CI=0.19


[180-212]:
1ml4a_PU7_180-212
CI=1.95


[213-229]:
1ml4a_PU7_213-229
CI=0.00


[230-245]:
1ml4a_PU7_230-245
CI=0.35


[246-263]:
1ml4a_PU7_246-263
CI=0.10


[264-289]:
1ml4a_PU7_264-289
CI=1.01


[290-307 ]:
1ml4a_PU7_290-307
CI=0.11


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-18]:
1ml4a_PU_1-18
CI=0.10


[19-38]:
1ml4a_PU_19-38
CI=0.28


[39-60]:
1ml4a_PU_39-60
CI=0.17


[61-76]:
1ml4a_PU_61-76
CI=0.34


[77-96]:
1ml4a_PU_77-96
CI=0.36


[97-122]:
1ml4a_PU_97-122
CI=1.00


[123-140]:
1ml4a_PU_123-140
CI=1.23


[141-160]:
1ml4a_PU_141-160
CI=0.46


[161-179]:
1ml4a_PU_161-179
CI=0.19


[180-212]:
1ml4a_PU_180-212
CI=1.95


[213-229]:
1ml4a_PU_213-229
CI=0.00


[230-245]:
1ml4a_PU_230-245
CI=0.35


[246-263]:
1ml4a_PU_246-263
CI=0.10


[264-289]:
1ml4a_PU_264-289
CI=1.01


[290-307 ]:
1ml4a_PU_290-307
CI=0.11