Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-76]:
1mlda_PU0_1-76
CI=4.68


[77-313 ]:
1mlda_PU0_77-313
CI=4.02


Level 1
PU
Molecule needs Java 1.4 Structure


[1-76]:
1mlda_PU1_1-76
CI=4.68


[77-138]:
1mlda_PU1_77-138
CI=2.09


[139-300]:
1mlda_PU1_139-300
CI=3.80


[301-313 ]:
1mlda_PU1_301-313
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-76]:
1mlda_PU2_1-76
CI=4.68


[77-138]:
1mlda_PU2_77-138
CI=2.09


[139-209]:
1mlda_PU2_139-209
CI=2.70


[210-225]:
1mlda_PU2_210-225
CI=1.49


[226-300]:
1mlda_PU2_226-300
CI=2.62


[301-313 ]:
1mlda_PU2_301-313
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-76]:
1mlda_PU3_1-76
CI=4.68


[77-138]:
1mlda_PU3_77-138
CI=2.09


[139-209]:
1mlda_PU3_139-209
CI=2.70


[210-225]:
1mlda_PU3_210-225
CI=1.49


[226-282]:
1mlda_PU3_226-282
CI=3.24


[283-300]:
1mlda_PU3_283-300
CI=0.00


[301-313 ]:
1mlda_PU3_301-313
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-76]:
1mlda_PU4_1-76
CI=4.68


[77-93]:
1mlda_PU4_77-93
CI=1.08


[94-138]:
1mlda_PU4_94-138
CI=1.63


[139-209]:
1mlda_PU4_139-209
CI=2.70


[210-225]:
1mlda_PU4_210-225
CI=1.49


[226-282]:
1mlda_PU4_226-282
CI=3.24


[283-300]:
1mlda_PU4_283-300
CI=0.00


[301-313 ]:
1mlda_PU4_301-313
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-76]:
1mlda_PU5_1-76
CI=4.68


[77-93]:
1mlda_PU5_77-93
CI=1.08


[94-138]:
1mlda_PU5_94-138
CI=1.63


[139-209]:
1mlda_PU5_139-209
CI=2.70


[210-225]:
1mlda_PU5_210-225
CI=1.49


[226-247]:
1mlda_PU5_226-247
CI=0.33


[248-282]:
1mlda_PU5_248-282
CI=3.28


[283-300]:
1mlda_PU5_283-300
CI=0.00


[301-313 ]:
1mlda_PU5_301-313
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-76]:
1mlda_PU6_1-76
CI=4.68


[77-93]:
1mlda_PU6_77-93
CI=1.08


[94-138]:
1mlda_PU6_94-138
CI=1.63


[139-169]:
1mlda_PU6_139-169
CI=0.97


[170-209]:
1mlda_PU6_170-209
CI=2.42


[210-225]:
1mlda_PU6_210-225
CI=1.49


[226-247]:
1mlda_PU6_226-247
CI=0.33


[248-282]:
1mlda_PU6_248-282
CI=3.28


[283-300]:
1mlda_PU6_283-300
CI=0.00


[301-313 ]:
1mlda_PU6_301-313
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-76]:
1mlda_PU7_1-76
CI=4.68


[77-93]:
1mlda_PU7_77-93
CI=1.08


[94-138]:
1mlda_PU7_94-138
CI=1.63


[139-169]:
1mlda_PU7_139-169
CI=0.97


[170-192]:
1mlda_PU7_170-192
CI=2.21


[193-209]:
1mlda_PU7_193-209
CI=0.00


[210-225]:
1mlda_PU7_210-225
CI=1.49


[226-247]:
1mlda_PU7_226-247
CI=0.33


[248-282]:
1mlda_PU7_248-282
CI=3.28


[283-300]:
1mlda_PU7_283-300
CI=0.00


[301-313 ]:
1mlda_PU7_301-313
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-76]:
1mlda_PU8_1-76
CI=4.68


[77-93]:
1mlda_PU8_77-93
CI=1.08


[94-114]:
1mlda_PU8_94-114
CI=0.25


[115-138]:
1mlda_PU8_115-138
CI=0.77


[139-169]:
1mlda_PU8_139-169
CI=0.97


[170-192]:
1mlda_PU8_170-192
CI=2.21


[193-209]:
1mlda_PU8_193-209
CI=0.00


[210-225]:
1mlda_PU8_210-225
CI=1.49


[226-247]:
1mlda_PU8_226-247
CI=0.33


[248-282]:
1mlda_PU8_248-282
CI=3.28


[283-300]:
1mlda_PU8_283-300
CI=0.00


[301-313 ]:
1mlda_PU8_301-313
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-26]:
1mlda_PU9_1-26
CI=0.94


[27-68]:
1mlda_PU9_27-68
CI=3.15


[69-76]:
1mlda_PU9_69-76
CI=0.00


[77-93]:
1mlda_PU9_77-93
CI=1.08


[94-114]:
1mlda_PU9_94-114
CI=0.25


[115-138]:
1mlda_PU9_115-138
CI=0.77


[139-169]:
1mlda_PU9_139-169
CI=0.97


[170-192]:
1mlda_PU9_170-192
CI=2.21


[193-209]:
1mlda_PU9_193-209
CI=0.00


[210-225]:
1mlda_PU9_210-225
CI=1.49


[226-247]:
1mlda_PU9_226-247
CI=0.33


[248-282]:
1mlda_PU9_248-282
CI=3.28


[283-300]:
1mlda_PU9_283-300
CI=0.00


[301-313 ]:
1mlda_PU9_301-313
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-26]:
1mlda_PU_1-26
CI=0.94


[27-50]:
1mlda_PU_27-50
CI=0.38


[51-68]:
1mlda_PU_51-68
CI=0.62


[69-76]:
1mlda_PU_69-76
CI=0.00


[77-93]:
1mlda_PU_77-93
CI=1.08


[94-114]:
1mlda_PU_94-114
CI=0.25


[115-138]:
1mlda_PU_115-138
CI=0.77


[139-169]:
1mlda_PU_139-169
CI=0.97


[170-192]:
1mlda_PU_170-192
CI=2.21


[193-209]:
1mlda_PU_193-209
CI=0.00


[210-225]:
1mlda_PU_210-225
CI=1.49


[226-247]:
1mlda_PU_226-247
CI=0.33


[248-282]:
1mlda_PU_248-282
CI=3.28


[283-300]:
1mlda_PU_283-300
CI=0.00


[301-313 ]:
1mlda_PU_301-313
CI=0.00