Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-218]:
1mnaa_PU0_1-218
CI=4.30


[219-276 ]:
1mnaa_PU0_219-276
CI=2.84


Level 1
PU
Molecule needs Java 1.4 Structure


[1-31]:
1mnaa_PU1_1-31
CI=0.90


[32-165]:
1mnaa_PU1_32-165
CI=4.80


[166-218]:
1mnaa_PU1_166-218
CI=0.21


[219-276 ]:
1mnaa_PU1_219-276
CI=2.84


Level 2
PU
Molecule needs Java 1.4 Structure


[1-31]:
1mnaa_PU2_1-31
CI=0.90


[32-165]:
1mnaa_PU2_32-165
CI=4.80


[166-192]:
1mnaa_PU2_166-192
CI=0.14


[193-218]:
1mnaa_PU2_193-218
CI=0.00


[219-276 ]:
1mnaa_PU2_219-276
CI=2.84


Level 3
PU
Molecule needs Java 1.4 Structure


[1-31]:
1mnaa_PU3_1-31
CI=0.90


[32-128]:
1mnaa_PU3_32-128
CI=3.70


[129-165]:
1mnaa_PU3_129-165
CI=4.06


[166-192]:
1mnaa_PU3_166-192
CI=0.14


[193-218]:
1mnaa_PU3_193-218
CI=0.00


[219-276 ]:
1mnaa_PU3_219-276
CI=2.84


Level 4
PU
Molecule needs Java 1.4 Structure


[1-31]:
1mnaa_PU4_1-31
CI=0.90


[32-50]:
1mnaa_PU4_32-50
CI=0.29


[51-95]:
1mnaa_PU4_51-95
CI=2.22


[96-128]:
1mnaa_PU4_96-128
CI=0.90


[129-165]:
1mnaa_PU4_129-165
CI=4.06


[166-192]:
1mnaa_PU4_166-192
CI=0.14


[193-218]:
1mnaa_PU4_193-218
CI=0.00


[219-276 ]:
1mnaa_PU4_219-276
CI=2.84


Level 5
PU
Molecule needs Java 1.4 Structure


[1-31]:
1mnaa_PU5_1-31
CI=0.90


[32-50]:
1mnaa_PU5_32-50
CI=0.29


[51-95]:
1mnaa_PU5_51-95
CI=2.22


[96-112]:
1mnaa_PU5_96-112
CI=1.19


[113-128]:
1mnaa_PU5_113-128
CI=0.00


[129-165]:
1mnaa_PU5_129-165
CI=4.06


[166-192]:
1mnaa_PU5_166-192
CI=0.14


[193-218]:
1mnaa_PU5_193-218
CI=0.00


[219-276 ]:
1mnaa_PU5_219-276
CI=2.84


Level 6
PU
Molecule needs Java 1.4 Structure


[1-31]:
1mnaa_PU6_1-31
CI=0.90


[32-50]:
1mnaa_PU6_32-50
CI=0.29


[51-95]:
1mnaa_PU6_51-95
CI=2.22


[96-112]:
1mnaa_PU6_96-112
CI=1.19


[113-128]:
1mnaa_PU6_113-128
CI=0.00


[129-165]:
1mnaa_PU6_129-165
CI=4.06


[166-192]:
1mnaa_PU6_166-192
CI=0.14


[193-218]:
1mnaa_PU6_193-218
CI=0.00


[219-256]:
1mnaa_PU6_219-256
CI=2.96


[257-276 ]:
1mnaa_PU6_257-276
CI=0.45


Level 7
PU
Molecule needs Java 1.4 Structure


[1-31]:
1mnaa_PU7_1-31
CI=0.90


[32-50]:
1mnaa_PU7_32-50
CI=0.29


[51-67]:
1mnaa_PU7_51-67
CI=0.00


[68-95]:
1mnaa_PU7_68-95
CI=0.47


[96-112]:
1mnaa_PU7_96-112
CI=1.19


[113-128]:
1mnaa_PU7_113-128
CI=0.00


[129-165]:
1mnaa_PU7_129-165
CI=4.06


[166-192]:
1mnaa_PU7_166-192
CI=0.14


[193-218]:
1mnaa_PU7_193-218
CI=0.00


[219-256]:
1mnaa_PU7_219-256
CI=2.96


[257-276 ]:
1mnaa_PU7_257-276
CI=0.45


Level 8
PU
Molecule needs Java 1.4 Structure


[1-31]:
1mnaa_PU8_1-31
CI=0.90


[32-50]:
1mnaa_PU8_32-50
CI=0.29


[51-67]:
1mnaa_PU8_51-67
CI=0.00


[68-95]:
1mnaa_PU8_68-95
CI=0.47


[96-112]:
1mnaa_PU8_96-112
CI=1.19


[113-128]:
1mnaa_PU8_113-128
CI=0.00


[129-145]:
1mnaa_PU8_129-145
CI=1.40


[146-165]:
1mnaa_PU8_146-165
CI=0.65


[166-192]:
1mnaa_PU8_166-192
CI=0.14


[193-218]:
1mnaa_PU8_193-218
CI=0.00


[219-256]:
1mnaa_PU8_219-256
CI=2.96


[257-276 ]:
1mnaa_PU8_257-276
CI=0.45


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-31]:
1mnaa_PU_1-31
CI=0.90


[32-50]:
1mnaa_PU_32-50
CI=0.29


[51-67]:
1mnaa_PU_51-67
CI=0.00


[68-95]:
1mnaa_PU_68-95
CI=0.47


[96-112]:
1mnaa_PU_96-112
CI=1.19


[113-128]:
1mnaa_PU_113-128
CI=0.00


[129-145]:
1mnaa_PU_129-145
CI=1.40


[146-165]:
1mnaa_PU_146-165
CI=0.65


[166-192]:
1mnaa_PU_166-192
CI=0.14


[193-218]:
1mnaa_PU_193-218
CI=0.00


[219-240]:
1mnaa_PU_219-240
CI=0.84


[241-256]:
1mnaa_PU_241-256
CI=0.00


[257-276 ]:
1mnaa_PU_257-276
CI=0.45