Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mola_PU0_1-16
CI=0.11


[17-34]:
1mola_PU0_17-34
CI=0.92


[35-94 ]:
1mola_PU0_35-94
CI=4.39


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mola_PU1_1-16
CI=0.11


[17-34]:
1mola_PU1_17-34
CI=0.92


[35-59]:
1mola_PU1_35-59
CI=2.13


[60-94 ]:
1mola_PU1_60-94
CI=2.91


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-16]:
1mola_PU_1-16
CI=0.11


[17-34]:
1mola_PU_17-34
CI=0.92


[35-59]:
1mola_PU_35-59
CI=2.13


[60-76]:
1mola_PU_60-76
CI=1.43


[77-94 ]:
1mola_PU_77-94
CI=0.00