Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-200]:
1moq0_PU0_1-200
CI=3.87


[201-358]:
1moq0_PU0_201-358
CI=3.91


[359-366 ]:
1moq0_PU0_359-366
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-49]:
1moq0_PU1_1-49
CI=0.54


[50-148]:
1moq0_PU1_50-148
CI=4.03


[149-200]:
1moq0_PU1_149-200
CI=0.99


[201-358]:
1moq0_PU1_201-358
CI=3.91


[359-366 ]:
1moq0_PU1_359-366
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-24]:
1moq0_PU2_1-24
CI=0.53


[25-49]:
1moq0_PU2_25-49
CI=0.52


[50-148]:
1moq0_PU2_50-148
CI=4.03


[149-200]:
1moq0_PU2_149-200
CI=0.99


[201-358]:
1moq0_PU2_201-358
CI=3.91


[359-366 ]:
1moq0_PU2_359-366
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-24]:
1moq0_PU3_1-24
CI=0.53


[25-49]:
1moq0_PU3_25-49
CI=0.52


[50-148]:
1moq0_PU3_50-148
CI=4.03


[149-170]:
1moq0_PU3_149-170
CI=1.02


[171-200]:
1moq0_PU3_171-200
CI=0.87


[201-358]:
1moq0_PU3_201-358
CI=3.91


[359-366 ]:
1moq0_PU3_359-366
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-24]:
1moq0_PU4_1-24
CI=0.53


[25-49]:
1moq0_PU4_25-49
CI=0.52


[50-148]:
1moq0_PU4_50-148
CI=4.03


[149-170]:
1moq0_PU4_149-170
CI=1.02


[171-200]:
1moq0_PU4_171-200
CI=0.87


[201-256]:
1moq0_PU4_201-256
CI=2.40


[257-324]:
1moq0_PU4_257-324
CI=3.00


[325-358]:
1moq0_PU4_325-358
CI=0.33


[359-366 ]:
1moq0_PU4_359-366
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-24]:
1moq0_PU5_1-24
CI=0.53


[25-49]:
1moq0_PU5_25-49
CI=0.52


[50-148]:
1moq0_PU5_50-148
CI=4.03


[149-170]:
1moq0_PU5_149-170
CI=1.02


[171-200]:
1moq0_PU5_171-200
CI=0.87


[201-218]:
1moq0_PU5_201-218
CI=0.00


[219-256]:
1moq0_PU5_219-256
CI=3.50


[257-324]:
1moq0_PU5_257-324
CI=3.00


[325-358]:
1moq0_PU5_325-358
CI=0.33


[359-366 ]:
1moq0_PU5_359-366
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-24]:
1moq0_PU6_1-24
CI=0.53


[25-49]:
1moq0_PU6_25-49
CI=0.52


[50-148]:
1moq0_PU6_50-148
CI=4.03


[149-170]:
1moq0_PU6_149-170
CI=1.02


[171-200]:
1moq0_PU6_171-200
CI=0.87


[201-218]:
1moq0_PU6_201-218
CI=0.00


[219-256]:
1moq0_PU6_219-256
CI=3.50


[257-324]:
1moq0_PU6_257-324
CI=3.00


[325-341]:
1moq0_PU6_325-341
CI=0.00


[342-358]:
1moq0_PU6_342-358
CI=0.64


[359-366 ]:
1moq0_PU6_359-366
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-24]:
1moq0_PU7_1-24
CI=0.53


[25-49]:
1moq0_PU7_25-49
CI=0.52


[50-84]:
1moq0_PU7_50-84
CI=2.51


[85-148]:
1moq0_PU7_85-148
CI=3.37


[149-170]:
1moq0_PU7_149-170
CI=1.02


[171-200]:
1moq0_PU7_171-200
CI=0.87


[201-218]:
1moq0_PU7_201-218
CI=0.00


[219-256]:
1moq0_PU7_219-256
CI=3.50


[257-324]:
1moq0_PU7_257-324
CI=3.00


[325-341]:
1moq0_PU7_325-341
CI=0.00


[342-358]:
1moq0_PU7_342-358
CI=0.64


[359-366 ]:
1moq0_PU7_359-366
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-24]:
1moq0_PU_1-24
CI=0.53


[25-49]:
1moq0_PU_25-49
CI=0.52


[50-84]:
1moq0_PU_50-84
CI=2.51


[85-148]:
1moq0_PU_85-148
CI=3.37


[149-170]:
1moq0_PU_149-170
CI=1.02


[171-200]:
1moq0_PU_171-200
CI=0.87


[201-218]:
1moq0_PU_201-218
CI=0.00


[219-256]:
1moq0_PU_219-256
CI=3.50


[257-299]:
1moq0_PU_257-299
CI=1.10


[300-324]:
1moq0_PU_300-324
CI=3.02


[325-341]:
1moq0_PU_325-341
CI=0.00


[342-358]:
1moq0_PU_342-358
CI=0.64


[359-366 ]:
1moq0_PU_359-366
CI=0.00