Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-64]:
1mpla_PU0_1-64
CI=2.37


[65-185]:
1mpla_PU0_65-185
CI=2.67


[186-345 ]:
1mpla_PU0_186-345
CI=3.83


Level 1
PU
Molecule needs Java 1.4 Structure


[1-64]:
1mpla_PU1_1-64
CI=2.37


[65-80]:
1mpla_PU1_65-80
CI=0.35


[81-164]:
1mpla_PU1_81-164
CI=2.76


[165-185]:
1mpla_PU1_165-185
CI=0.70


[186-345 ]:
1mpla_PU1_186-345
CI=3.83


Level 2
PU
Molecule needs Java 1.4 Structure


[1-64]:
1mpla_PU2_1-64
CI=2.37


[65-80]:
1mpla_PU2_65-80
CI=0.35


[81-112]:
1mpla_PU2_81-112
CI=1.44


[113-132]:
1mpla_PU2_113-132
CI=0.66


[133-164]:
1mpla_PU2_133-164
CI=0.47


[165-185]:
1mpla_PU2_165-185
CI=0.70


[186-345 ]:
1mpla_PU2_186-345
CI=3.83


Level 3
PU
Molecule needs Java 1.4 Structure


[1-64]:
1mpla_PU3_1-64
CI=2.37


[65-80]:
1mpla_PU3_65-80
CI=0.35


[81-112]:
1mpla_PU3_81-112
CI=1.44


[113-132]:
1mpla_PU3_113-132
CI=0.66


[133-164]:
1mpla_PU3_133-164
CI=0.47


[165-185]:
1mpla_PU3_165-185
CI=0.70


[186-241]:
1mpla_PU3_186-241
CI=2.43


[242-345 ]:
1mpla_PU3_242-345
CI=3.68


Level 4
PU
Molecule needs Java 1.4 Structure


[1-64]:
1mpla_PU4_1-64
CI=2.37


[65-80]:
1mpla_PU4_65-80
CI=0.35


[81-112]:
1mpla_PU4_81-112
CI=1.44


[113-132]:
1mpla_PU4_113-132
CI=0.66


[133-164]:
1mpla_PU4_133-164
CI=0.47


[165-185]:
1mpla_PU4_165-185
CI=0.70


[186-241]:
1mpla_PU4_186-241
CI=2.43


[242-257]:
1mpla_PU4_242-257
CI=0.12


[258-285]:
1mpla_PU4_258-285
CI=2.30


[286-345 ]:
1mpla_PU4_286-345
CI=3.18


Level 5
PU
Molecule needs Java 1.4 Structure


[1-40]:
1mpla_PU5_1-40
CI=2.09


[41-64]:
1mpla_PU5_41-64
CI=0.87


[65-80]:
1mpla_PU5_65-80
CI=0.35


[81-112]:
1mpla_PU5_81-112
CI=1.44


[113-132]:
1mpla_PU5_113-132
CI=0.66


[133-164]:
1mpla_PU5_133-164
CI=0.47


[165-185]:
1mpla_PU5_165-185
CI=0.70


[186-241]:
1mpla_PU5_186-241
CI=2.43


[242-257]:
1mpla_PU5_242-257
CI=0.12


[258-285]:
1mpla_PU5_258-285
CI=2.30


[286-345 ]:
1mpla_PU5_286-345
CI=3.18


Level 6
PU
Molecule needs Java 1.4 Structure


[1-40]:
1mpla_PU6_1-40
CI=2.09


[41-64]:
1mpla_PU6_41-64
CI=0.87


[65-80]:
1mpla_PU6_65-80
CI=0.35


[81-112]:
1mpla_PU6_81-112
CI=1.44


[113-132]:
1mpla_PU6_113-132
CI=0.66


[133-164]:
1mpla_PU6_133-164
CI=0.47


[165-185]:
1mpla_PU6_165-185
CI=0.70


[186-207]:
1mpla_PU6_186-207
CI=0.41


[208-241]:
1mpla_PU6_208-241
CI=1.51


[242-257]:
1mpla_PU6_242-257
CI=0.12


[258-285]:
1mpla_PU6_258-285
CI=2.30


[286-345 ]:
1mpla_PU6_286-345
CI=3.18


Level 7
PU
Molecule needs Java 1.4 Structure


[1-40]:
1mpla_PU7_1-40
CI=2.09


[41-64]:
1mpla_PU7_41-64
CI=0.87


[65-80]:
1mpla_PU7_65-80
CI=0.35


[81-112]:
1mpla_PU7_81-112
CI=1.44


[113-132]:
1mpla_PU7_113-132
CI=0.66


[133-164]:
1mpla_PU7_133-164
CI=0.47


[165-185]:
1mpla_PU7_165-185
CI=0.70


[186-207]:
1mpla_PU7_186-207
CI=0.41


[208-225]:
1mpla_PU7_208-225
CI=2.49


[226-241]:
1mpla_PU7_226-241
CI=0.23


[242-257]:
1mpla_PU7_242-257
CI=0.12


[258-285]:
1mpla_PU7_258-285
CI=2.30


[286-345 ]:
1mpla_PU7_286-345
CI=3.18


Level 8
PU
Molecule needs Java 1.4 Structure


[1-21]:
1mpla_PU8_1-21
CI=0.00


[22-40]:
1mpla_PU8_22-40
CI=2.37


[41-64]:
1mpla_PU8_41-64
CI=0.87


[65-80]:
1mpla_PU8_65-80
CI=0.35


[81-112]:
1mpla_PU8_81-112
CI=1.44


[113-132]:
1mpla_PU8_113-132
CI=0.66


[133-164]:
1mpla_PU8_133-164
CI=0.47


[165-185]:
1mpla_PU8_165-185
CI=0.70


[186-207]:
1mpla_PU8_186-207
CI=0.41


[208-225]:
1mpla_PU8_208-225
CI=2.49


[226-241]:
1mpla_PU8_226-241
CI=0.23


[242-257]:
1mpla_PU8_242-257
CI=0.12


[258-285]:
1mpla_PU8_258-285
CI=2.30


[286-345 ]:
1mpla_PU8_286-345
CI=3.18


Level 9
PU
Molecule needs Java 1.4 Structure


[1-21]:
1mpla_PU9_1-21
CI=0.00


[22-40]:
1mpla_PU9_22-40
CI=2.37


[41-64]:
1mpla_PU9_41-64
CI=0.87


[65-80]:
1mpla_PU9_65-80
CI=0.35


[81-112]:
1mpla_PU9_81-112
CI=1.44


[113-132]:
1mpla_PU9_113-132
CI=0.66


[133-164]:
1mpla_PU9_133-164
CI=0.47


[165-185]:
1mpla_PU9_165-185
CI=0.70


[186-207]:
1mpla_PU9_186-207
CI=0.41


[208-225]:
1mpla_PU9_208-225
CI=2.49


[226-241]:
1mpla_PU9_226-241
CI=0.23


[242-257]:
1mpla_PU9_242-257
CI=0.12


[258-285]:
1mpla_PU9_258-285
CI=2.30


[286-324]:
1mpla_PU9_286-324
CI=3.36


[325-345 ]:
1mpla_PU9_325-345
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-21]:
1mpla_PU_1-21
CI=0.00


[22-40]:
1mpla_PU_22-40
CI=2.37


[41-64]:
1mpla_PU_41-64
CI=0.87


[65-80]:
1mpla_PU_65-80
CI=0.35


[81-112]:
1mpla_PU_81-112
CI=1.44


[113-132]:
1mpla_PU_113-132
CI=0.66


[133-164]:
1mpla_PU_133-164
CI=0.47


[165-185]:
1mpla_PU_165-185
CI=0.70


[186-207]:
1mpla_PU_186-207
CI=0.41


[208-225]:
1mpla_PU_208-225
CI=2.49


[226-241]:
1mpla_PU_226-241
CI=0.23


[242-257]:
1mpla_PU_242-257
CI=0.12


[258-285]:
1mpla_PU_258-285
CI=2.30


[286-308]:
1mpla_PU_286-308
CI=1.73


[309-324]:
1mpla_PU_309-324
CI=0.69


[325-345 ]:
1mpla_PU_325-345
CI=0.00