Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-207]:
1mpp0_PU0_1-207
CI=5.17


[208-331]:
1mpp0_PU0_208-331
CI=4.42


[332-357 ]:
1mpp0_PU0_332-357
CI=1.90


Level 1
PU
Molecule needs Java 1.4 Structure


[1-183]:
1mpp0_PU1_1-183
CI=5.53


[184-207]:
1mpp0_PU1_184-207
CI=0.53


[208-331]:
1mpp0_PU1_208-331
CI=4.42


[332-357 ]:
1mpp0_PU1_332-357
CI=1.90


Level 2
PU
Molecule needs Java 1.4 Structure


[1-22]:
1mpp0_PU2_1-22
CI=1.52


[23-148]:
1mpp0_PU2_23-148
CI=4.73


[149-183]:
1mpp0_PU2_149-183
CI=2.67


[184-207]:
1mpp0_PU2_184-207
CI=0.53


[208-331]:
1mpp0_PU2_208-331
CI=4.42


[332-357 ]:
1mpp0_PU2_332-357
CI=1.90


Level 3
PU
Molecule needs Java 1.4 Structure


[1-22]:
1mpp0_PU3_1-22
CI=1.52


[23-132]:
1mpp0_PU3_23-132
CI=4.80


[133-148]:
1mpp0_PU3_133-148
CI=1.49


[149-183]:
1mpp0_PU3_149-183
CI=2.67


[184-207]:
1mpp0_PU3_184-207
CI=0.53


[208-331]:
1mpp0_PU3_208-331
CI=4.42


[332-357 ]:
1mpp0_PU3_332-357
CI=1.90


Level 4
PU
Molecule needs Java 1.4 Structure


[1-22]:
1mpp0_PU4_1-22
CI=1.52


[23-132]:
1mpp0_PU4_23-132
CI=4.80


[133-148]:
1mpp0_PU4_133-148
CI=1.49


[149-183]:
1mpp0_PU4_149-183
CI=2.67


[184-207]:
1mpp0_PU4_184-207
CI=0.53


[208-253]:
1mpp0_PU4_208-253
CI=2.01


[254-314]:
1mpp0_PU4_254-314
CI=2.89


[315-331]:
1mpp0_PU4_315-331
CI=0.22


[332-357 ]:
1mpp0_PU4_332-357
CI=1.90


Level 5
PU
Molecule needs Java 1.4 Structure


[1-22]:
1mpp0_PU5_1-22
CI=1.52


[23-132]:
1mpp0_PU5_23-132
CI=4.80


[133-148]:
1mpp0_PU5_133-148
CI=1.49


[149-183]:
1mpp0_PU5_149-183
CI=2.67


[184-207]:
1mpp0_PU5_184-207
CI=0.53


[208-253]:
1mpp0_PU5_208-253
CI=2.01


[254-272]:
1mpp0_PU5_254-272
CI=0.88


[273-301]:
1mpp0_PU5_273-301
CI=2.76


[302-314]:
1mpp0_PU5_302-314
CI=1.98


[315-331]:
1mpp0_PU5_315-331
CI=0.22


[332-357 ]:
1mpp0_PU5_332-357
CI=1.90


Level 6
PU
Molecule needs Java 1.4 Structure


[1-22]:
1mpp0_PU6_1-22
CI=1.52


[23-132]:
1mpp0_PU6_23-132
CI=4.80


[133-148]:
1mpp0_PU6_133-148
CI=1.49


[149-183]:
1mpp0_PU6_149-183
CI=2.67


[184-207]:
1mpp0_PU6_184-207
CI=0.53


[208-230]:
1mpp0_PU6_208-230
CI=2.55


[231-253]:
1mpp0_PU6_231-253
CI=0.00


[254-272]:
1mpp0_PU6_254-272
CI=0.88


[273-301]:
1mpp0_PU6_273-301
CI=2.76


[302-314]:
1mpp0_PU6_302-314
CI=1.98


[315-331]:
1mpp0_PU6_315-331
CI=0.22


[332-357 ]:
1mpp0_PU6_332-357
CI=1.90


Level 7
PU
Molecule needs Java 1.4 Structure


[1-22]:
1mpp0_PU7_1-22
CI=1.52


[23-65]:
1mpp0_PU7_23-65
CI=1.59


[66-105]:
1mpp0_PU7_66-105
CI=3.65


[106-132]:
1mpp0_PU7_106-132
CI=0.48


[133-148]:
1mpp0_PU7_133-148
CI=1.49


[149-183]:
1mpp0_PU7_149-183
CI=2.67


[184-207]:
1mpp0_PU7_184-207
CI=0.53


[208-230]:
1mpp0_PU7_208-230
CI=2.55


[231-253]:
1mpp0_PU7_231-253
CI=0.00


[254-272]:
1mpp0_PU7_254-272
CI=0.88


[273-301]:
1mpp0_PU7_273-301
CI=2.76


[302-314]:
1mpp0_PU7_302-314
CI=1.98


[315-331]:
1mpp0_PU7_315-331
CI=0.22


[332-357 ]:
1mpp0_PU7_332-357
CI=1.90


Level 8
PU
Molecule needs Java 1.4 Structure


[1-22]:
1mpp0_PU8_1-22
CI=1.52


[23-65]:
1mpp0_PU8_23-65
CI=1.59


[66-88]:
1mpp0_PU8_66-88
CI=2.30


[89-105]:
1mpp0_PU8_89-105
CI=2.53


[106-132]:
1mpp0_PU8_106-132
CI=0.48


[133-148]:
1mpp0_PU8_133-148
CI=1.49


[149-183]:
1mpp0_PU8_149-183
CI=2.67


[184-207]:
1mpp0_PU8_184-207
CI=0.53


[208-230]:
1mpp0_PU8_208-230
CI=2.55


[231-253]:
1mpp0_PU8_231-253
CI=0.00


[254-272]:
1mpp0_PU8_254-272
CI=0.88


[273-301]:
1mpp0_PU8_273-301
CI=2.76


[302-314]:
1mpp0_PU8_302-314
CI=1.98


[315-331]:
1mpp0_PU8_315-331
CI=0.22


[332-357 ]:
1mpp0_PU8_332-357
CI=1.90


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-22]:
1mpp0_PU_1-22
CI=1.52


[23-43]:
1mpp0_PU_23-43
CI=0.35


[44-65]:
1mpp0_PU_44-65
CI=1.02


[66-88]:
1mpp0_PU_66-88
CI=2.30


[89-105]:
1mpp0_PU_89-105
CI=2.53


[106-132]:
1mpp0_PU_106-132
CI=0.48


[133-148]:
1mpp0_PU_133-148
CI=1.49


[149-183]:
1mpp0_PU_149-183
CI=2.67


[184-207]:
1mpp0_PU_184-207
CI=0.53


[208-230]:
1mpp0_PU_208-230
CI=2.55


[231-253]:
1mpp0_PU_231-253
CI=0.00


[254-272]:
1mpp0_PU_254-272
CI=0.88


[273-301]:
1mpp0_PU_273-301
CI=2.76


[302-314]:
1mpp0_PU_302-314
CI=1.98


[315-331]:
1mpp0_PU_315-331
CI=0.22


[332-357 ]:
1mpp0_PU_332-357
CI=1.90