Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-107]:
1mqia_PU0_1-107
CI=3.47


[108-214]:
1mqia_PU0_108-214
CI=3.24


[215-260 ]:
1mqia_PU0_215-260
CI=0.33


Level 1
PU
Molecule needs Java 1.4 Structure


[1-107]:
1mqia_PU1_1-107
CI=3.47


[108-214]:
1mqia_PU1_108-214
CI=3.24


[215-236]:
1mqia_PU1_215-236
CI=0.42


[237-260 ]:
1mqia_PU1_237-260
CI=0.16


Level 2
PU
Molecule needs Java 1.4 Structure


[1-88]:
1mqia_PU2_1-88
CI=4.08


[89-107]:
1mqia_PU2_89-107
CI=0.19


[108-214]:
1mqia_PU2_108-214
CI=3.24


[215-236]:
1mqia_PU2_215-236
CI=0.42


[237-260 ]:
1mqia_PU2_237-260
CI=0.16


Level 3
PU
Molecule needs Java 1.4 Structure


[1-88]:
1mqia_PU3_1-88
CI=4.08


[89-107]:
1mqia_PU3_89-107
CI=0.19


[108-134]:
1mqia_PU3_108-134
CI=0.27


[135-171]:
1mqia_PU3_135-171
CI=1.49


[172-214]:
1mqia_PU3_172-214
CI=1.00


[215-236]:
1mqia_PU3_215-236
CI=0.42


[237-260 ]:
1mqia_PU3_237-260
CI=0.16


Level 4
PU
Molecule needs Java 1.4 Structure


[1-88]:
1mqia_PU4_1-88
CI=4.08


[89-107]:
1mqia_PU4_89-107
CI=0.19


[108-134]:
1mqia_PU4_108-134
CI=0.27


[135-171]:
1mqia_PU4_135-171
CI=1.49


[172-190]:
1mqia_PU4_172-190
CI=0.68


[191-214]:
1mqia_PU4_191-214
CI=0.98


[215-236]:
1mqia_PU4_215-236
CI=0.42


[237-260 ]:
1mqia_PU4_237-260
CI=0.16


Level 5
PU
Molecule needs Java 1.4 Structure


[1-53]:
1mqia_PU5_1-53
CI=2.96


[54-88]:
1mqia_PU5_54-88
CI=2.75


[89-107]:
1mqia_PU5_89-107
CI=0.19


[108-134]:
1mqia_PU5_108-134
CI=0.27


[135-171]:
1mqia_PU5_135-171
CI=1.49


[172-190]:
1mqia_PU5_172-190
CI=0.68


[191-214]:
1mqia_PU5_191-214
CI=0.98


[215-236]:
1mqia_PU5_215-236
CI=0.42


[237-260 ]:
1mqia_PU5_237-260
CI=0.16


Level 6
PU
Molecule needs Java 1.4 Structure


[1-53]:
1mqia_PU6_1-53
CI=2.96


[54-88]:
1mqia_PU6_54-88
CI=2.75


[89-107]:
1mqia_PU6_89-107
CI=0.19


[108-134]:
1mqia_PU6_108-134
CI=0.27


[135-155]:
1mqia_PU6_135-155
CI=0.71


[156-171]:
1mqia_PU6_156-171
CI=0.22


[172-190]:
1mqia_PU6_172-190
CI=0.68


[191-214]:
1mqia_PU6_191-214
CI=0.98


[215-236]:
1mqia_PU6_215-236
CI=0.42


[237-260 ]:
1mqia_PU6_237-260
CI=0.16


Level 7
PU
Molecule needs Java 1.4 Structure


[1-36]:
1mqia_PU7_1-36
CI=2.21


[37-53]:
1mqia_PU7_37-53
CI=0.31


[54-88]:
1mqia_PU7_54-88
CI=2.75


[89-107]:
1mqia_PU7_89-107
CI=0.19


[108-134]:
1mqia_PU7_108-134
CI=0.27


[135-155]:
1mqia_PU7_135-155
CI=0.71


[156-171]:
1mqia_PU7_156-171
CI=0.22


[172-190]:
1mqia_PU7_172-190
CI=0.68


[191-214]:
1mqia_PU7_191-214
CI=0.98


[215-236]:
1mqia_PU7_215-236
CI=0.42


[237-260 ]:
1mqia_PU7_237-260
CI=0.16


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-17]:
1mqia_PU_1-17
CI=0.53


[18-36]:
1mqia_PU_18-36
CI=1.07


[37-53]:
1mqia_PU_37-53
CI=0.31


[54-88]:
1mqia_PU_54-88
CI=2.75


[89-107]:
1mqia_PU_89-107
CI=0.19


[108-134]:
1mqia_PU_108-134
CI=0.27


[135-155]:
1mqia_PU_135-155
CI=0.71


[156-171]:
1mqia_PU_156-171
CI=0.22


[172-190]:
1mqia_PU_172-190
CI=0.68


[191-214]:
1mqia_PU_191-214
CI=0.98


[215-236]:
1mqia_PU_215-236
CI=0.42


[237-260 ]:
1mqia_PU_237-260
CI=0.16