Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-26]:
1mqkl_PU0_1-26
CI=1.68


[27-75]:
1mqkl_PU0_27-75
CI=3.62


[76-108 ]:
1mqkl_PU0_76-108
CI=2.03


Level 1
PU
Molecule needs Java 1.4 Structure


[1-26]:
1mqkl_PU1_1-26
CI=1.68


[27-58]:
1mqkl_PU1_27-58
CI=2.51


[59-75]:
1mqkl_PU1_59-75
CI=2.09


[76-108 ]:
1mqkl_PU1_76-108
CI=2.03


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-26]:
1mqkl_PU_1-26
CI=1.68


[27-58]:
1mqkl_PU_27-58
CI=2.51


[59-75]:
1mqkl_PU_59-75
CI=2.09


[76-92]:
1mqkl_PU_76-92
CI=0.00


[93-108 ]:
1mqkl_PU_93-108
CI=0.00