Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mqva_PU0_1-16
CI=0.00


[17-40]:
1mqva_PU0_17-40
CI=0.86


[41-123 ]:
1mqva_PU0_41-123
CI=1.97


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mqva_PU1_1-16
CI=0.00


[17-40]:
1mqva_PU1_17-40
CI=0.86


[41-82]:
1mqva_PU1_41-82
CI=0.76


[83-112]:
1mqva_PU1_83-112
CI=1.44


[113-123 ]:
1mqva_PU1_113-123
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-16]:
1mqva_PU_1-16
CI=0.00


[17-40]:
1mqva_PU_17-40
CI=0.86


[41-58]:
1mqva_PU_41-58
CI=0.00


[59-82]:
1mqva_PU_59-82
CI=0.46


[83-112]:
1mqva_PU_83-112
CI=1.44


[113-123 ]:
1mqva_PU_113-123
CI=0.00