Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-74]:
1mr8a_PU0_1-74
CI=1.99


[75-90 ]:
1mr8a_PU0_75-90
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1mr8a_PU1_1-17
CI=0.00


[18-74]:
1mr8a_PU1_18-74
CI=2.21


[75-90 ]:
1mr8a_PU1_75-90
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-17]:
1mr8a_PU_1-17
CI=0.00


[18-33]:
1mr8a_PU_18-33
CI=1.83


[34-57]:
1mr8a_PU_34-57
CI=0.84


[58-74]:
1mr8a_PU_58-74
CI=1.09


[75-90 ]:
1mr8a_PU_75-90
CI=0.00