Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-158]:
1mrza_PU0_1-158
CI=3.35


[159-266 ]:
1mrza_PU0_159-266
CI=3.62


Level 1
PU
Molecule needs Java 1.4 Structure


[1-158]:
1mrza_PU1_1-158
CI=3.35


[159-241]:
1mrza_PU1_159-241
CI=4.56


[242-266 ]:
1mrza_PU1_242-266
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-71]:
1mrza_PU2_1-71
CI=2.76


[72-125]:
1mrza_PU2_72-125
CI=2.17


[126-158]:
1mrza_PU2_126-158
CI=1.59


[159-241]:
1mrza_PU2_159-241
CI=4.56


[242-266 ]:
1mrza_PU2_242-266
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-71]:
1mrza_PU3_1-71
CI=2.76


[72-92]:
1mrza_PU3_72-92
CI=0.09


[93-125]:
1mrza_PU3_93-125
CI=2.31


[126-158]:
1mrza_PU3_126-158
CI=1.59


[159-241]:
1mrza_PU3_159-241
CI=4.56


[242-266 ]:
1mrza_PU3_242-266
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-36]:
1mrza_PU4_1-36
CI=2.11


[37-71]:
1mrza_PU4_37-71
CI=0.85


[72-92]:
1mrza_PU4_72-92
CI=0.09


[93-125]:
1mrza_PU4_93-125
CI=2.31


[126-158]:
1mrza_PU4_126-158
CI=1.59


[159-241]:
1mrza_PU4_159-241
CI=4.56


[242-266 ]:
1mrza_PU4_242-266
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-36]:
1mrza_PU5_1-36
CI=2.11


[37-53]:
1mrza_PU5_37-53
CI=0.32


[54-71]:
1mrza_PU5_54-71
CI=0.50


[72-92]:
1mrza_PU5_72-92
CI=0.09


[93-125]:
1mrza_PU5_93-125
CI=2.31


[126-158]:
1mrza_PU5_126-158
CI=1.59


[159-241]:
1mrza_PU5_159-241
CI=4.56


[242-266 ]:
1mrza_PU5_242-266
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-20]:
1mrza_PU6_1-20
CI=0.82


[21-36]:
1mrza_PU6_21-36
CI=0.57


[37-53]:
1mrza_PU6_37-53
CI=0.32


[54-71]:
1mrza_PU6_54-71
CI=0.50


[72-92]:
1mrza_PU6_72-92
CI=0.09


[93-125]:
1mrza_PU6_93-125
CI=2.31


[126-158]:
1mrza_PU6_126-158
CI=1.59


[159-241]:
1mrza_PU6_159-241
CI=4.56


[242-266 ]:
1mrza_PU6_242-266
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-20]:
1mrza_PU7_1-20
CI=0.82


[21-36]:
1mrza_PU7_21-36
CI=0.57


[37-53]:
1mrza_PU7_37-53
CI=0.32


[54-71]:
1mrza_PU7_54-71
CI=0.50


[72-92]:
1mrza_PU7_72-92
CI=0.09


[93-125]:
1mrza_PU7_93-125
CI=2.31


[126-158]:
1mrza_PU7_126-158
CI=1.59


[159-179]:
1mrza_PU7_159-179
CI=1.16


[180-219]:
1mrza_PU7_180-219
CI=3.50


[220-241]:
1mrza_PU7_220-241
CI=0.00


[242-266 ]:
1mrza_PU7_242-266
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-20]:
1mrza_PU8_1-20
CI=0.82


[21-36]:
1mrza_PU8_21-36
CI=0.57


[37-53]:
1mrza_PU8_37-53
CI=0.32


[54-71]:
1mrza_PU8_54-71
CI=0.50


[72-92]:
1mrza_PU8_72-92
CI=0.09


[93-125]:
1mrza_PU8_93-125
CI=2.31


[126-158]:
1mrza_PU8_126-158
CI=1.59


[159-179]:
1mrza_PU8_159-179
CI=1.16


[180-200]:
1mrza_PU8_180-200
CI=1.36


[201-219]:
1mrza_PU8_201-219
CI=2.16


[220-241]:
1mrza_PU8_220-241
CI=0.00


[242-266 ]:
1mrza_PU8_242-266
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-20]:
1mrza_PU_1-20
CI=0.82


[21-36]:
1mrza_PU_21-36
CI=0.57


[37-53]:
1mrza_PU_37-53
CI=0.32


[54-71]:
1mrza_PU_54-71
CI=0.50


[72-92]:
1mrza_PU_72-92
CI=0.09


[93-109]:
1mrza_PU_93-109
CI=0.33


[110-125]:
1mrza_PU_110-125
CI=0.46


[126-158]:
1mrza_PU_126-158
CI=1.59


[159-179]:
1mrza_PU_159-179
CI=1.16


[180-200]:
1mrza_PU_180-200
CI=1.36


[201-219]:
1mrza_PU_201-219
CI=2.16


[220-241]:
1mrza_PU_220-241
CI=0.00


[242-266 ]:
1mrza_PU_242-266
CI=0.00