Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-95]:
1msc0_PU0_1-95
CI=4.04


[96-129 ]:
1msc0_PU0_96-129
CI=0.61


Level 1
PU
Molecule needs Java 1.4 Structure


[1-95]:
1msc0_PU1_1-95
CI=4.04


[96-113]:
1msc0_PU1_96-113
CI=0.00


[114-129 ]:
1msc0_PU1_114-129
CI=0.69


Level 2
PU
Molecule needs Java 1.4 Structure


[1-34]:
1msc0_PU2_1-34
CI=2.98


[35-95]:
1msc0_PU2_35-95
CI=3.49


[96-113]:
1msc0_PU2_96-113
CI=0.00


[114-129 ]:
1msc0_PU2_114-129
CI=0.69


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-34]:
1msc0_PU_1-34
CI=2.98


[35-63]:
1msc0_PU_35-63
CI=2.24


[64-95]:
1msc0_PU_64-95
CI=1.36


[96-113]:
1msc0_PU_96-113
CI=0.00


[114-129 ]:
1msc0_PU_114-129
CI=0.69