Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-162]:
1mtpa_PU0_1-162
CI=2.85


[163-253]:
1mtpa_PU0_163-253
CI=3.32


[254-320 ]:
1mtpa_PU0_254-320
CI=3.66


Level 1
PU
Molecule needs Java 1.4 Structure


[1-69]:
1mtpa_PU1_1-69
CI=1.60


[70-162]:
1mtpa_PU1_70-162
CI=3.27


[163-253]:
1mtpa_PU1_163-253
CI=3.32


[254-320 ]:
1mtpa_PU1_254-320
CI=3.66


Level 2
PU
Molecule needs Java 1.4 Structure


[1-69]:
1mtpa_PU2_1-69
CI=1.60


[70-162]:
1mtpa_PU2_70-162
CI=3.27


[163-195]:
1mtpa_PU2_163-195
CI=2.09


[196-245]:
1mtpa_PU2_196-245
CI=2.73


[246-253]:
1mtpa_PU2_246-253
CI=0.00


[254-320 ]:
1mtpa_PU2_254-320
CI=3.66


Level 3
PU
Molecule needs Java 1.4 Structure


[1-32]:
1mtpa_PU3_1-32
CI=0.58


[33-69]:
1mtpa_PU3_33-69
CI=1.62


[70-162]:
1mtpa_PU3_70-162
CI=3.27


[163-195]:
1mtpa_PU3_163-195
CI=2.09


[196-245]:
1mtpa_PU3_196-245
CI=2.73


[246-253]:
1mtpa_PU3_246-253
CI=0.00


[254-320 ]:
1mtpa_PU3_254-320
CI=3.66


Level 4
PU
Molecule needs Java 1.4 Structure


[1-32]:
1mtpa_PU4_1-32
CI=0.58


[33-69]:
1mtpa_PU4_33-69
CI=1.62


[70-112]:
1mtpa_PU4_70-112
CI=2.22


[113-150]:
1mtpa_PU4_113-150
CI=1.95


[151-162]:
1mtpa_PU4_151-162
CI=0.00


[163-195]:
1mtpa_PU4_163-195
CI=2.09


[196-245]:
1mtpa_PU4_196-245
CI=2.73


[246-253]:
1mtpa_PU4_246-253
CI=0.00


[254-320 ]:
1mtpa_PU4_254-320
CI=3.66


Level 5
PU
Molecule needs Java 1.4 Structure


[1-32]:
1mtpa_PU5_1-32
CI=0.58


[33-69]:
1mtpa_PU5_33-69
CI=1.62


[70-112]:
1mtpa_PU5_70-112
CI=2.22


[113-150]:
1mtpa_PU5_113-150
CI=1.95


[151-162]:
1mtpa_PU5_151-162
CI=0.00


[163-195]:
1mtpa_PU5_163-195
CI=2.09


[196-245]:
1mtpa_PU5_196-245
CI=2.73


[246-253]:
1mtpa_PU5_246-253
CI=0.00


[254-272]:
1mtpa_PU5_254-272
CI=0.00


[273-293]:
1mtpa_PU5_273-293
CI=2.21


[294-320 ]:
1mtpa_PU5_294-320
CI=2.46


Level 6
PU
Molecule needs Java 1.4 Structure


[1-32]:
1mtpa_PU6_1-32
CI=0.58


[33-69]:
1mtpa_PU6_33-69
CI=1.62


[70-86]:
1mtpa_PU6_70-86
CI=0.54


[87-112]:
1mtpa_PU6_87-112
CI=1.02


[113-150]:
1mtpa_PU6_113-150
CI=1.95


[151-162]:
1mtpa_PU6_151-162
CI=0.00


[163-195]:
1mtpa_PU6_163-195
CI=2.09


[196-245]:
1mtpa_PU6_196-245
CI=2.73


[246-253]:
1mtpa_PU6_246-253
CI=0.00


[254-272]:
1mtpa_PU6_254-272
CI=0.00


[273-293]:
1mtpa_PU6_273-293
CI=2.21


[294-320 ]:
1mtpa_PU6_294-320
CI=2.46


Level 7
PU
Molecule needs Java 1.4 Structure


[1-32]:
1mtpa_PU7_1-32
CI=0.58


[33-69]:
1mtpa_PU7_33-69
CI=1.62


[70-86]:
1mtpa_PU7_70-86
CI=0.54


[87-112]:
1mtpa_PU7_87-112
CI=1.02


[113-150]:
1mtpa_PU7_113-150
CI=1.95


[151-162]:
1mtpa_PU7_151-162
CI=0.00


[163-195]:
1mtpa_PU7_163-195
CI=2.09


[196-229]:
1mtpa_PU7_196-229
CI=2.59


[230-245]:
1mtpa_PU7_230-245
CI=0.00


[246-253]:
1mtpa_PU7_246-253
CI=0.00


[254-272]:
1mtpa_PU7_254-272
CI=0.00


[273-293]:
1mtpa_PU7_273-293
CI=2.21


[294-320 ]:
1mtpa_PU7_294-320
CI=2.46


Level 8
PU
Molecule needs Java 1.4 Structure


[1-32]:
1mtpa_PU8_1-32
CI=0.58


[33-51]:
1mtpa_PU8_33-51
CI=0.39


[52-69]:
1mtpa_PU8_52-69
CI=0.41


[70-86]:
1mtpa_PU8_70-86
CI=0.54


[87-112]:
1mtpa_PU8_87-112
CI=1.02


[113-150]:
1mtpa_PU8_113-150
CI=1.95


[151-162]:
1mtpa_PU8_151-162
CI=0.00


[163-195]:
1mtpa_PU8_163-195
CI=2.09


[196-229]:
1mtpa_PU8_196-229
CI=2.59


[230-245]:
1mtpa_PU8_230-245
CI=0.00


[246-253]:
1mtpa_PU8_246-253
CI=0.00


[254-272]:
1mtpa_PU8_254-272
CI=0.00


[273-293]:
1mtpa_PU8_273-293
CI=2.21


[294-320 ]:
1mtpa_PU8_294-320
CI=2.46


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-32]:
1mtpa_PU_1-32
CI=0.58


[33-51]:
1mtpa_PU_33-51
CI=0.39


[52-69]:
1mtpa_PU_52-69
CI=0.41


[70-86]:
1mtpa_PU_70-86
CI=0.54


[87-112]:
1mtpa_PU_87-112
CI=1.02


[113-129]:
1mtpa_PU_113-129
CI=0.43


[130-150]:
1mtpa_PU_130-150
CI=0.53


[151-162]:
1mtpa_PU_151-162
CI=0.00


[163-195]:
1mtpa_PU_163-195
CI=2.09


[196-229]:
1mtpa_PU_196-229
CI=2.59


[230-245]:
1mtpa_PU_230-245
CI=0.00


[246-253]:
1mtpa_PU_246-253
CI=0.00


[254-272]:
1mtpa_PU_254-272
CI=0.00


[273-293]:
1mtpa_PU_273-293
CI=2.21


[294-320 ]:
1mtpa_PU_294-320
CI=2.46