Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-141]:
1mtza_PU0_1-141
CI=4.28


[142-174]:
1mtza_PU0_142-174
CI=1.64


[175-290 ]:
1mtza_PU0_175-290
CI=2.53


Level 1
PU
Molecule needs Java 1.4 Structure


[1-141]:
1mtza_PU1_1-141
CI=4.28


[142-174]:
1mtza_PU1_142-174
CI=1.64


[175-190]:
1mtza_PU1_175-190
CI=0.22


[191-221]:
1mtza_PU1_191-221
CI=1.47


[222-290 ]:
1mtza_PU1_222-290
CI=2.75


Level 2
PU
Molecule needs Java 1.4 Structure


[1-141]:
1mtza_PU2_1-141
CI=4.28


[142-174]:
1mtza_PU2_142-174
CI=1.64


[175-190]:
1mtza_PU2_175-190
CI=0.22


[191-221]:
1mtza_PU2_191-221
CI=1.47


[222-268]:
1mtza_PU2_222-268
CI=3.46


[269-290 ]:
1mtza_PU2_269-290
CI=0.34


Level 3
PU
Molecule needs Java 1.4 Structure


[1-125]:
1mtza_PU3_1-125
CI=4.47


[126-141]:
1mtza_PU3_126-141
CI=0.12


[142-174]:
1mtza_PU3_142-174
CI=1.64


[175-190]:
1mtza_PU3_175-190
CI=0.22


[191-221]:
1mtza_PU3_191-221
CI=1.47


[222-268]:
1mtza_PU3_222-268
CI=3.46


[269-290 ]:
1mtza_PU3_269-290
CI=0.34


Level 4
PU
Molecule needs Java 1.4 Structure


[1-74]:
1mtza_PU4_1-74
CI=3.91


[75-125]:
1mtza_PU4_75-125
CI=2.69


[126-141]:
1mtza_PU4_126-141
CI=0.12


[142-174]:
1mtza_PU4_142-174
CI=1.64


[175-190]:
1mtza_PU4_175-190
CI=0.22


[191-221]:
1mtza_PU4_191-221
CI=1.47


[222-268]:
1mtza_PU4_222-268
CI=3.46


[269-290 ]:
1mtza_PU4_269-290
CI=0.34


Level 5
PU
Molecule needs Java 1.4 Structure


[1-19]:
1mtza_PU5_1-19
CI=2.38


[20-57]:
1mtza_PU5_20-57
CI=2.75


[58-74]:
1mtza_PU5_58-74
CI=1.19


[75-125]:
1mtza_PU5_75-125
CI=2.69


[126-141]:
1mtza_PU5_126-141
CI=0.12


[142-174]:
1mtza_PU5_142-174
CI=1.64


[175-190]:
1mtza_PU5_175-190
CI=0.22


[191-221]:
1mtza_PU5_191-221
CI=1.47


[222-268]:
1mtza_PU5_222-268
CI=3.46


[269-290 ]:
1mtza_PU5_269-290
CI=0.34


Level 6
PU
Molecule needs Java 1.4 Structure


[1-19]:
1mtza_PU6_1-19
CI=2.38


[20-57]:
1mtza_PU6_20-57
CI=2.75


[58-74]:
1mtza_PU6_58-74
CI=1.19


[75-94]:
1mtza_PU6_75-94
CI=0.09


[95-125]:
1mtza_PU6_95-125
CI=3.17


[126-141]:
1mtza_PU6_126-141
CI=0.12


[142-174]:
1mtza_PU6_142-174
CI=1.64


[175-190]:
1mtza_PU6_175-190
CI=0.22


[191-221]:
1mtza_PU6_191-221
CI=1.47


[222-268]:
1mtza_PU6_222-268
CI=3.46


[269-290 ]:
1mtza_PU6_269-290
CI=0.34


Level 7
PU
Molecule needs Java 1.4 Structure


[1-19]:
1mtza_PU7_1-19
CI=2.38


[20-57]:
1mtza_PU7_20-57
CI=2.75


[58-74]:
1mtza_PU7_58-74
CI=1.19


[75-94]:
1mtza_PU7_75-94
CI=0.09


[95-125]:
1mtza_PU7_95-125
CI=3.17


[126-141]:
1mtza_PU7_126-141
CI=0.12


[142-158]:
1mtza_PU7_142-158
CI=0.43


[159-174]:
1mtza_PU7_159-174
CI=0.23


[175-190]:
1mtza_PU7_175-190
CI=0.22


[191-221]:
1mtza_PU7_191-221
CI=1.47


[222-268]:
1mtza_PU7_222-268
CI=3.46


[269-290 ]:
1mtza_PU7_269-290
CI=0.34


Level 8
PU
Molecule needs Java 1.4 Structure


[1-19]:
1mtza_PU8_1-19
CI=2.38


[20-41]:
1mtza_PU8_20-41
CI=0.50


[42-57]:
1mtza_PU8_42-57
CI=0.56


[58-74]:
1mtza_PU8_58-74
CI=1.19


[75-94]:
1mtza_PU8_75-94
CI=0.09


[95-125]:
1mtza_PU8_95-125
CI=3.17


[126-141]:
1mtza_PU8_126-141
CI=0.12


[142-158]:
1mtza_PU8_142-158
CI=0.43


[159-174]:
1mtza_PU8_159-174
CI=0.23


[175-190]:
1mtza_PU8_175-190
CI=0.22


[191-221]:
1mtza_PU8_191-221
CI=1.47


[222-268]:
1mtza_PU8_222-268
CI=3.46


[269-290 ]:
1mtza_PU8_269-290
CI=0.34


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-19]:
1mtza_PU_1-19
CI=2.38


[20-41]:
1mtza_PU_20-41
CI=0.50


[42-57]:
1mtza_PU_42-57
CI=0.56


[58-74]:
1mtza_PU_58-74
CI=1.19


[75-94]:
1mtza_PU_75-94
CI=0.09


[95-125]:
1mtza_PU_95-125
CI=3.17


[126-141]:
1mtza_PU_126-141
CI=0.12


[142-158]:
1mtza_PU_142-158
CI=0.43


[159-174]:
1mtza_PU_159-174
CI=0.23


[175-190]:
1mtza_PU_175-190
CI=0.22


[191-221]:
1mtza_PU_191-221
CI=1.47


[222-238]:
1mtza_PU_222-238
CI=0.00


[239-268]:
1mtza_PU_239-268
CI=1.70


[269-290 ]:
1mtza_PU_269-290
CI=0.34