Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-127]:
1muca_PU0_1-127
CI=3.40


[128-236]:
1muca_PU0_128-236
CI=3.08


[237-360 ]:
1muca_PU0_237-360
CI=3.38


Level 1
PU
Molecule needs Java 1.4 Structure


[1-127]:
1muca_PU1_1-127
CI=3.40


[128-236]:
1muca_PU1_128-236
CI=3.08


[237-323]:
1muca_PU1_237-323
CI=3.72


[324-360 ]:
1muca_PU1_324-360
CI=1.64


Level 2
PU
Molecule needs Java 1.4 Structure


[1-109]:
1muca_PU2_1-109
CI=3.76


[110-127]:
1muca_PU2_110-127
CI=0.10


[128-236]:
1muca_PU2_128-236
CI=3.08


[237-323]:
1muca_PU2_237-323
CI=3.72


[324-360 ]:
1muca_PU2_324-360
CI=1.64


Level 3
PU
Molecule needs Java 1.4 Structure


[1-109]:
1muca_PU3_1-109
CI=3.76


[110-127]:
1muca_PU3_110-127
CI=0.10


[128-186]:
1muca_PU3_128-186
CI=2.24


[187-236]:
1muca_PU3_187-236
CI=2.46


[237-323]:
1muca_PU3_237-323
CI=3.72


[324-360 ]:
1muca_PU3_324-360
CI=1.64


Level 4
PU
Molecule needs Java 1.4 Structure


[1-109]:
1muca_PU4_1-109
CI=3.76


[110-127]:
1muca_PU4_110-127
CI=0.10


[128-186]:
1muca_PU4_128-186
CI=2.24


[187-236]:
1muca_PU4_187-236
CI=2.46


[237-283]:
1muca_PU4_237-283
CI=2.50


[284-323]:
1muca_PU4_284-323
CI=2.71


[324-360 ]:
1muca_PU4_324-360
CI=1.64


Level 5
PU
Molecule needs Java 1.4 Structure


[1-56]:
1muca_PU5_1-56
CI=3.85


[57-88]:
1muca_PU5_57-88
CI=0.57


[89-109]:
1muca_PU5_89-109
CI=0.00


[110-127]:
1muca_PU5_110-127
CI=0.10


[128-186]:
1muca_PU5_128-186
CI=2.24


[187-236]:
1muca_PU5_187-236
CI=2.46


[237-283]:
1muca_PU5_237-283
CI=2.50


[284-323]:
1muca_PU5_284-323
CI=2.71


[324-360 ]:
1muca_PU5_324-360
CI=1.64


Level 6
PU
Molecule needs Java 1.4 Structure


[1-40]:
1muca_PU6_1-40
CI=3.75


[41-56]:
1muca_PU6_41-56
CI=1.25


[57-88]:
1muca_PU6_57-88
CI=0.57


[89-109]:
1muca_PU6_89-109
CI=0.00


[110-127]:
1muca_PU6_110-127
CI=0.10


[128-186]:
1muca_PU6_128-186
CI=2.24


[187-236]:
1muca_PU6_187-236
CI=2.46


[237-283]:
1muca_PU6_237-283
CI=2.50


[284-323]:
1muca_PU6_284-323
CI=2.71


[324-360 ]:
1muca_PU6_324-360
CI=1.64


Level 7
PU
Molecule needs Java 1.4 Structure


[1-40]:
1muca_PU7_1-40
CI=3.75


[41-56]:
1muca_PU7_41-56
CI=1.25


[57-88]:
1muca_PU7_57-88
CI=0.57


[89-109]:
1muca_PU7_89-109
CI=0.00


[110-127]:
1muca_PU7_110-127
CI=0.10


[128-152]:
1muca_PU7_128-152
CI=0.89


[153-186]:
1muca_PU7_153-186
CI=1.57


[187-236]:
1muca_PU7_187-236
CI=2.46


[237-283]:
1muca_PU7_237-283
CI=2.50


[284-323]:
1muca_PU7_284-323
CI=2.71


[324-360 ]:
1muca_PU7_324-360
CI=1.64


Level 8
PU
Molecule needs Java 1.4 Structure


[1-40]:
1muca_PU8_1-40
CI=3.75


[41-56]:
1muca_PU8_41-56
CI=1.25


[57-88]:
1muca_PU8_57-88
CI=0.57


[89-109]:
1muca_PU8_89-109
CI=0.00


[110-127]:
1muca_PU8_110-127
CI=0.10


[128-152]:
1muca_PU8_128-152
CI=0.89


[153-186]:
1muca_PU8_153-186
CI=1.57


[187-236]:
1muca_PU8_187-236
CI=2.46


[237-283]:
1muca_PU8_237-283
CI=2.50


[284-323]:
1muca_PU8_284-323
CI=2.71


[324-340]:
1muca_PU8_324-340
CI=0.76


[341-360 ]:
1muca_PU8_341-360
CI=0.10


Level 9
PU
Molecule needs Java 1.4 Structure


[1-40]:
1muca_PU9_1-40
CI=3.75


[41-56]:
1muca_PU9_41-56
CI=1.25


[57-88]:
1muca_PU9_57-88
CI=0.57


[89-109]:
1muca_PU9_89-109
CI=0.00


[110-127]:
1muca_PU9_110-127
CI=0.10


[128-152]:
1muca_PU9_128-152
CI=0.89


[153-170]:
1muca_PU9_153-170
CI=0.40


[171-186]:
1muca_PU9_171-186
CI=0.34


[187-236]:
1muca_PU9_187-236
CI=2.46


[237-283]:
1muca_PU9_237-283
CI=2.50


[284-323]:
1muca_PU9_284-323
CI=2.71


[324-340]:
1muca_PU9_324-340
CI=0.76


[341-360 ]:
1muca_PU9_341-360
CI=0.10


Level 10
PU
Molecule needs Java 1.4 Structure


[1-40]:
1muca_PU10_1-40
CI=3.75


[41-56]:
1muca_PU10_41-56
CI=1.25


[57-88]:
1muca_PU10_57-88
CI=0.57


[89-109]:
1muca_PU10_89-109
CI=0.00


[110-127]:
1muca_PU10_110-127
CI=0.10


[128-152]:
1muca_PU10_128-152
CI=0.89


[153-170]:
1muca_PU10_153-170
CI=0.40


[171-186]:
1muca_PU10_171-186
CI=0.34


[187-216]:
1muca_PU10_187-216
CI=1.59


[217-236]:
1muca_PU10_217-236
CI=0.37


[237-283]:
1muca_PU10_237-283
CI=2.50


[284-323]:
1muca_PU10_284-323
CI=2.71


[324-340]:
1muca_PU10_324-340
CI=0.76


[341-360 ]:
1muca_PU10_341-360
CI=0.10


Final level 11

PU
Molecule needs Java 1.4 Structure


[1-40]:
1muca_PU_1-40
CI=3.75


[41-56]:
1muca_PU_41-56
CI=1.25


[57-88]:
1muca_PU_57-88
CI=0.57


[89-109]:
1muca_PU_89-109
CI=0.00


[110-127]:
1muca_PU_110-127
CI=0.10


[128-152]:
1muca_PU_128-152
CI=0.89


[153-170]:
1muca_PU_153-170
CI=0.40


[171-186]:
1muca_PU_171-186
CI=0.34


[187-216]:
1muca_PU_187-216
CI=1.59


[217-236]:
1muca_PU_217-236
CI=0.37


[237-260]:
1muca_PU_237-260
CI=0.85


[261-283]:
1muca_PU_261-283
CI=0.73


[284-323]:
1muca_PU_284-323
CI=2.71


[324-340]:
1muca_PU_324-340
CI=0.76


[341-360 ]:
1muca_PU_341-360
CI=0.10