Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-35]:
1mwpa_PU0_1-35
CI=3.68


[36-59]:
1mwpa_PU0_36-59
CI=1.72


[60-96 ]:
1mwpa_PU0_60-96
CI=2.39


Level 1
PU
Molecule needs Java 1.4 Structure


[1-35]:
1mwpa_PU1_1-35
CI=3.68


[36-59]:
1mwpa_PU1_36-59
CI=1.72


[60-80]:
1mwpa_PU1_60-80
CI=1.25


[81-96 ]:
1mwpa_PU1_81-96
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-17]:
1mwpa_PU_1-17
CI=1.31


[18-35]:
1mwpa_PU_18-35
CI=0.63


[36-59]:
1mwpa_PU_36-59
CI=1.72


[60-80]:
1mwpa_PU_60-80
CI=1.25


[81-96 ]:
1mwpa_PU_81-96
CI=0.00