Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-20]:
1mwqa_PU0_1-20
CI=0.00


[21-36]:
1mwqa_PU0_21-36
CI=0.00


[37-99 ]:
1mwqa_PU0_37-99
CI=2.02


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1mwqa_PU1_1-20
CI=0.00


[21-36]:
1mwqa_PU1_21-36
CI=0.00


[37-64]:
1mwqa_PU1_37-64
CI=2.92


[65-99 ]:
1mwqa_PU1_65-99
CI=0.81


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-20]:
1mwqa_PU_1-20
CI=0.00


[21-36]:
1mwqa_PU_21-36
CI=0.00


[37-64]:
1mwqa_PU_37-64
CI=2.92


[65-82]:
1mwqa_PU_65-82
CI=0.20


[83-99 ]:
1mwqa_PU_83-99
CI=0.00