Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-76]:
1mxee_PU0_1-76
CI=1.58


[77-144 ]:
1mxee_PU0_77-144
CI=1.69


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1mxee_PU1_1-24
CI=0.39


[25-60]:
1mxee_PU1_25-60
CI=1.41


[61-76]:
1mxee_PU1_61-76
CI=0.00


[77-144 ]:
1mxee_PU1_77-144
CI=1.69


Level 2
PU
Molecule needs Java 1.4 Structure


[1-24]:
1mxee_PU2_1-24
CI=0.39


[25-60]:
1mxee_PU2_25-60
CI=1.41


[61-76]:
1mxee_PU2_61-76
CI=0.00


[77-98]:
1mxee_PU2_77-98
CI=0.67


[99-124]:
1mxee_PU2_99-124
CI=0.93


[125-144 ]:
1mxee_PU2_125-144
CI=0.85


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-24]:
1mxee_PU_1-24
CI=0.39


[25-41]:
1mxee_PU_25-41
CI=0.43


[42-60]:
1mxee_PU_42-60
CI=0.97


[61-76]:
1mxee_PU_61-76
CI=0.00


[77-98]:
1mxee_PU_77-98
CI=0.67


[99-124]:
1mxee_PU_99-124
CI=0.93


[125-144 ]:
1mxee_PU_125-144
CI=0.85