Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-18]:
1my7a_PU0_1-18
CI=0.00


[19-66]:
1my7a_PU0_19-66
CI=4.26


[67-107 ]:
1my7a_PU0_67-107
CI=2.34


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1my7a_PU1_1-18
CI=0.00


[19-66]:
1my7a_PU1_19-66
CI=4.26


[67-91]:
1my7a_PU1_67-91
CI=0.68


[92-107 ]:
1my7a_PU1_92-107
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-18]:
1my7a_PU_1-18
CI=0.00


[19-47]:
1my7a_PU_19-47
CI=1.11


[48-66]:
1my7a_PU_48-66
CI=1.84


[67-91]:
1my7a_PU_67-91
CI=0.68


[92-107 ]:
1my7a_PU_92-107
CI=0.00