Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-83]:
1mzba_PU0_1-83
CI=2.45


[84-133 ]:
1mzba_PU0_84-133
CI=1.89


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1mzba_PU1_1-19
CI=0.58


[20-83]:
1mzba_PU1_20-83
CI=2.58


[84-133 ]:
1mzba_PU1_84-133
CI=1.89


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1mzba_PU2_1-19
CI=0.58


[20-56]:
1mzba_PU2_20-56
CI=1.37


[57-83]:
1mzba_PU2_57-83
CI=2.38


[84-133 ]:
1mzba_PU2_84-133
CI=1.89


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1mzba_PU3_1-19
CI=0.58


[20-56]:
1mzba_PU3_20-56
CI=1.37


[57-83]:
1mzba_PU3_57-83
CI=2.38


[84-101]:
1mzba_PU3_84-101
CI=2.28


[102-133 ]:
1mzba_PU3_102-133
CI=0.24


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-19]:
1mzba_PU_1-19
CI=0.58


[20-37]:
1mzba_PU_20-37
CI=0.40


[38-56]:
1mzba_PU_38-56
CI=0.87


[57-83]:
1mzba_PU_57-83
CI=2.38


[84-101]:
1mzba_PU_84-101
CI=2.28


[102-133 ]:
1mzba_PU_102-133
CI=0.24