Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-113]:
1n08a_PU0_1-113
CI=4.31


[114-130]:
1n08a_PU0_114-130
CI=0.21


[131-154 ]:
1n08a_PU0_131-154
CI=0.23


Level 1
PU
Molecule needs Java 1.4 Structure


[1-23]:
1n08a_PU1_1-23
CI=0.00


[24-39]:
1n08a_PU1_24-39
CI=1.04


[40-113]:
1n08a_PU1_40-113
CI=4.01


[114-130]:
1n08a_PU1_114-130
CI=0.21


[131-154 ]:
1n08a_PU1_131-154
CI=0.23


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-23]:
1n08a_PU_1-23
CI=0.00


[24-39]:
1n08a_PU_24-39
CI=1.04


[40-72]:
1n08a_PU_40-72
CI=1.45


[73-90]:
1n08a_PU_73-90
CI=2.18


[91-113]:
1n08a_PU_91-113
CI=0.00


[114-130]:
1n08a_PU_114-130
CI=0.21


[131-154 ]:
1n08a_PU_131-154
CI=0.23