Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-58]:
1n0qa_PU0_1-58
CI=4.19


[59-91 ]:
1n0qa_PU0_59-91
CI=1.71


Level 1
PU
Molecule needs Java 1.4 Structure


[1-58]:
1n0qa_PU1_1-58
CI=4.19


[59-75]:
1n0qa_PU1_59-75
CI=1.29


[76-91 ]:
1n0qa_PU1_76-91
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-25]:
1n0qa_PU2_1-25
CI=0.86


[26-58]:
1n0qa_PU2_26-58
CI=2.28


[59-75]:
1n0qa_PU2_59-75
CI=1.29


[76-91 ]:
1n0qa_PU2_76-91
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-25]:
1n0qa_PU_1-25
CI=0.86


[26-42]:
1n0qa_PU_26-42
CI=1.41


[43-58]:
1n0qa_PU_43-58
CI=0.11


[59-75]:
1n0qa_PU_59-75
CI=1.29


[76-91 ]:
1n0qa_PU_76-91
CI=0.00