Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-72]:
1n12a_PU0_1-72
CI=1.78


[73-108]:
1n12a_PU0_73-108
CI=3.50


[109-135 ]:
1n12a_PU0_109-135
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-44]:
1n12a_PU1_1-44
CI=1.16


[45-72]:
1n12a_PU1_45-72
CI=2.42


[73-108]:
1n12a_PU1_73-108
CI=3.50


[109-135 ]:
1n12a_PU1_109-135
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-44]:
1n12a_PU2_1-44
CI=1.16


[45-72]:
1n12a_PU2_45-72
CI=2.42


[73-92]:
1n12a_PU2_73-92
CI=1.77


[93-108]:
1n12a_PU2_93-108
CI=1.96


[109-135 ]:
1n12a_PU2_109-135
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-21]:
1n12a_PU_1-21
CI=0.00


[22-44]:
1n12a_PU_22-44
CI=0.00


[45-72]:
1n12a_PU_45-72
CI=2.42


[73-92]:
1n12a_PU_73-92
CI=1.77


[93-108]:
1n12a_PU_93-108
CI=1.96


[109-135 ]:
1n12a_PU_109-135
CI=0.00