Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-37]:
1n1jb_PU0_1-37
CI=0.92


[38-87 ]:
1n1jb_PU0_38-87
CI=1.52


Level 1
PU
Molecule needs Java 1.4 Structure


[1-37]:
1n1jb_PU1_1-37
CI=0.92


[38-71]:
1n1jb_PU1_38-71
CI=1.88


[72-87 ]:
1n1jb_PU1_72-87
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-21]:
1n1jb_PU2_1-21
CI=0.17


[22-37]:
1n1jb_PU2_22-37
CI=0.00


[38-71]:
1n1jb_PU2_38-71
CI=1.88


[72-87 ]:
1n1jb_PU2_72-87
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-21]:
1n1jb_PU_1-21
CI=0.17


[22-37]:
1n1jb_PU_22-37
CI=0.00


[38-55]:
1n1jb_PU_38-55
CI=0.10


[56-71]:
1n1jb_PU_56-71
CI=0.00


[72-87 ]:
1n1jb_PU_72-87
CI=0.00