Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-185]:
1n2ea_PU0_1-185
CI=3.65


[186-288 ]:
1n2ea_PU0_186-288
CI=3.62


Level 1
PU
Molecule needs Java 1.4 Structure


[1-113]:
1n2ea_PU1_1-113
CI=2.84


[114-185]:
1n2ea_PU1_114-185
CI=2.55


[186-288 ]:
1n2ea_PU1_186-288
CI=3.62


Level 2
PU
Molecule needs Java 1.4 Structure


[1-65]:
1n2ea_PU2_1-65
CI=2.08


[66-81]:
1n2ea_PU2_66-81
CI=0.23


[82-113]:
1n2ea_PU2_82-113
CI=0.17


[114-185]:
1n2ea_PU2_114-185
CI=2.55


[186-288 ]:
1n2ea_PU2_186-288
CI=3.62


Level 3
PU
Molecule needs Java 1.4 Structure


[1-29]:
1n2ea_PU3_1-29
CI=0.59


[30-65]:
1n2ea_PU3_30-65
CI=2.97


[66-81]:
1n2ea_PU3_66-81
CI=0.23


[82-113]:
1n2ea_PU3_82-113
CI=0.17


[114-185]:
1n2ea_PU3_114-185
CI=2.55


[186-288 ]:
1n2ea_PU3_186-288
CI=3.62


Level 4
PU
Molecule needs Java 1.4 Structure


[1-29]:
1n2ea_PU4_1-29
CI=0.59


[30-65]:
1n2ea_PU4_30-65
CI=2.97


[66-81]:
1n2ea_PU4_66-81
CI=0.23


[82-113]:
1n2ea_PU4_82-113
CI=0.17


[114-149]:
1n2ea_PU4_114-149
CI=1.21


[150-185]:
1n2ea_PU4_150-185
CI=2.65


[186-288 ]:
1n2ea_PU4_186-288
CI=3.62


Level 5
PU
Molecule needs Java 1.4 Structure


[1-29]:
1n2ea_PU5_1-29
CI=0.59


[30-65]:
1n2ea_PU5_30-65
CI=2.97


[66-81]:
1n2ea_PU5_66-81
CI=0.23


[82-113]:
1n2ea_PU5_82-113
CI=0.17


[114-149]:
1n2ea_PU5_114-149
CI=1.21


[150-185]:
1n2ea_PU5_150-185
CI=2.65


[186-213]:
1n2ea_PU5_186-213
CI=1.21


[214-288 ]:
1n2ea_PU5_214-288
CI=3.68


Level 6
PU
Molecule needs Java 1.4 Structure


[1-29]:
1n2ea_PU6_1-29
CI=0.59


[30-65]:
1n2ea_PU6_30-65
CI=2.97


[66-81]:
1n2ea_PU6_66-81
CI=0.23


[82-113]:
1n2ea_PU6_82-113
CI=0.17


[114-149]:
1n2ea_PU6_114-149
CI=1.21


[150-185]:
1n2ea_PU6_150-185
CI=2.65


[186-213]:
1n2ea_PU6_186-213
CI=1.21


[214-241]:
1n2ea_PU6_214-241
CI=1.49


[242-280]:
1n2ea_PU6_242-280
CI=3.45


[281-288 ]:
1n2ea_PU6_281-288
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-29]:
1n2ea_PU7_1-29
CI=0.59


[30-65]:
1n2ea_PU7_30-65
CI=2.97


[66-81]:
1n2ea_PU7_66-81
CI=0.23


[82-113]:
1n2ea_PU7_82-113
CI=0.17


[114-133]:
1n2ea_PU7_114-133
CI=0.55


[134-149]:
1n2ea_PU7_134-149
CI=0.00


[150-185]:
1n2ea_PU7_150-185
CI=2.65


[186-213]:
1n2ea_PU7_186-213
CI=1.21


[214-241]:
1n2ea_PU7_214-241
CI=1.49


[242-280]:
1n2ea_PU7_242-280
CI=3.45


[281-288 ]:
1n2ea_PU7_281-288
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-29]:
1n2ea_PU8_1-29
CI=0.59


[30-65]:
1n2ea_PU8_30-65
CI=2.97


[66-81]:
1n2ea_PU8_66-81
CI=0.23


[82-113]:
1n2ea_PU8_82-113
CI=0.17


[114-133]:
1n2ea_PU8_114-133
CI=0.55


[134-149]:
1n2ea_PU8_134-149
CI=0.00


[150-185]:
1n2ea_PU8_150-185
CI=2.65


[186-213]:
1n2ea_PU8_186-213
CI=1.21


[214-241]:
1n2ea_PU8_214-241
CI=1.49


[242-264]:
1n2ea_PU8_242-264
CI=1.22


[265-280]:
1n2ea_PU8_265-280
CI=1.98


[281-288 ]:
1n2ea_PU8_281-288
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-29]:
1n2ea_PU9_1-29
CI=0.59


[30-65]:
1n2ea_PU9_30-65
CI=2.97


[66-81]:
1n2ea_PU9_66-81
CI=0.23


[82-113]:
1n2ea_PU9_82-113
CI=0.17


[114-133]:
1n2ea_PU9_114-133
CI=0.55


[134-149]:
1n2ea_PU9_134-149
CI=0.00


[150-166]:
1n2ea_PU9_150-166
CI=0.85


[167-185]:
1n2ea_PU9_167-185
CI=0.29


[186-213]:
1n2ea_PU9_186-213
CI=1.21


[214-241]:
1n2ea_PU9_214-241
CI=1.49


[242-264]:
1n2ea_PU9_242-264
CI=1.22


[265-280]:
1n2ea_PU9_265-280
CI=1.98


[281-288 ]:
1n2ea_PU9_281-288
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-29]:
1n2ea_PU_1-29
CI=0.59


[30-49]:
1n2ea_PU_30-49
CI=0.37


[50-65]:
1n2ea_PU_50-65
CI=0.57


[66-81]:
1n2ea_PU_66-81
CI=0.23


[82-113]:
1n2ea_PU_82-113
CI=0.17


[114-133]:
1n2ea_PU_114-133
CI=0.55


[134-149]:
1n2ea_PU_134-149
CI=0.00


[150-166]:
1n2ea_PU_150-166
CI=0.85


[167-185]:
1n2ea_PU_167-185
CI=0.29


[186-213]:
1n2ea_PU_186-213
CI=1.21


[214-241]:
1n2ea_PU_214-241
CI=1.49


[242-264]:
1n2ea_PU_242-264
CI=1.22


[265-280]:
1n2ea_PU_265-280
CI=1.98


[281-288 ]:
1n2ea_PU_281-288
CI=0.00