Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-150]:
1n2sa_PU0_1-150
CI=3.99


[151-298 ]:
1n2sa_PU0_151-298
CI=2.99


Level 1
PU
Molecule needs Java 1.4 Structure


[1-62]:
1n2sa_PU1_1-62
CI=3.20


[63-150]:
1n2sa_PU1_63-150
CI=3.24


[151-298 ]:
1n2sa_PU1_151-298
CI=2.99


Level 2
PU
Molecule needs Java 1.4 Structure


[1-62]:
1n2sa_PU2_1-62
CI=3.20


[63-150]:
1n2sa_PU2_63-150
CI=3.24


[151-192]:
1n2sa_PU2_151-192
CI=1.28


[193-213]:
1n2sa_PU2_193-213
CI=0.27


[214-298 ]:
1n2sa_PU2_214-298
CI=1.10


Level 3
PU
Molecule needs Java 1.4 Structure


[1-62]:
1n2sa_PU3_1-62
CI=3.20


[63-150]:
1n2sa_PU3_63-150
CI=3.24


[151-192]:
1n2sa_PU3_151-192
CI=1.28


[193-213]:
1n2sa_PU3_193-213
CI=0.27


[214-249]:
1n2sa_PU3_214-249
CI=0.15


[250-265]:
1n2sa_PU3_250-265
CI=0.00


[266-298 ]:
1n2sa_PU3_266-298
CI=0.22


Level 4
PU
Molecule needs Java 1.4 Structure


[1-62]:
1n2sa_PU4_1-62
CI=3.20


[63-150]:
1n2sa_PU4_63-150
CI=3.24


[151-192]:
1n2sa_PU4_151-192
CI=1.28


[193-213]:
1n2sa_PU4_193-213
CI=0.27


[214-249]:
1n2sa_PU4_214-249
CI=0.15


[250-265]:
1n2sa_PU4_250-265
CI=0.00


[266-282]:
1n2sa_PU4_266-282
CI=0.42


[283-298 ]:
1n2sa_PU4_283-298
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-62]:
1n2sa_PU5_1-62
CI=3.20


[63-107]:
1n2sa_PU5_63-107
CI=0.75


[108-123]:
1n2sa_PU5_108-123
CI=0.35


[124-150]:
1n2sa_PU5_124-150
CI=0.48


[151-192]:
1n2sa_PU5_151-192
CI=1.28


[193-213]:
1n2sa_PU5_193-213
CI=0.27


[214-249]:
1n2sa_PU5_214-249
CI=0.15


[250-265]:
1n2sa_PU5_250-265
CI=0.00


[266-282]:
1n2sa_PU5_266-282
CI=0.42


[283-298 ]:
1n2sa_PU5_283-298
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-62]:
1n2sa_PU6_1-62
CI=3.20


[63-84]:
1n2sa_PU6_63-84
CI=1.00


[85-107]:
1n2sa_PU6_85-107
CI=0.47


[108-123]:
1n2sa_PU6_108-123
CI=0.35


[124-150]:
1n2sa_PU6_124-150
CI=0.48


[151-192]:
1n2sa_PU6_151-192
CI=1.28


[193-213]:
1n2sa_PU6_193-213
CI=0.27


[214-249]:
1n2sa_PU6_214-249
CI=0.15


[250-265]:
1n2sa_PU6_250-265
CI=0.00


[266-282]:
1n2sa_PU6_266-282
CI=0.42


[283-298 ]:
1n2sa_PU6_283-298
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-62]:
1n2sa_PU7_1-62
CI=3.20


[63-84]:
1n2sa_PU7_63-84
CI=1.00


[85-107]:
1n2sa_PU7_85-107
CI=0.47


[108-123]:
1n2sa_PU7_108-123
CI=0.35


[124-150]:
1n2sa_PU7_124-150
CI=0.48


[151-192]:
1n2sa_PU7_151-192
CI=1.28


[193-213]:
1n2sa_PU7_193-213
CI=0.27


[214-230]:
1n2sa_PU7_214-230
CI=0.00


[231-249]:
1n2sa_PU7_231-249
CI=0.09


[250-265]:
1n2sa_PU7_250-265
CI=0.00


[266-282]:
1n2sa_PU7_266-282
CI=0.42


[283-298 ]:
1n2sa_PU7_283-298
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-28]:
1n2sa_PU8_1-28
CI=2.03


[29-62]:
1n2sa_PU8_29-62
CI=1.38


[63-84]:
1n2sa_PU8_63-84
CI=1.00


[85-107]:
1n2sa_PU8_85-107
CI=0.47


[108-123]:
1n2sa_PU8_108-123
CI=0.35


[124-150]:
1n2sa_PU8_124-150
CI=0.48


[151-192]:
1n2sa_PU8_151-192
CI=1.28


[193-213]:
1n2sa_PU8_193-213
CI=0.27


[214-230]:
1n2sa_PU8_214-230
CI=0.00


[231-249]:
1n2sa_PU8_231-249
CI=0.09


[250-265]:
1n2sa_PU8_250-265
CI=0.00


[266-282]:
1n2sa_PU8_266-282
CI=0.42


[283-298 ]:
1n2sa_PU8_283-298
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-28]:
1n2sa_PU9_1-28
CI=2.03


[29-46]:
1n2sa_PU9_29-46
CI=1.94


[47-62]:
1n2sa_PU9_47-62
CI=0.00


[63-84]:
1n2sa_PU9_63-84
CI=1.00


[85-107]:
1n2sa_PU9_85-107
CI=0.47


[108-123]:
1n2sa_PU9_108-123
CI=0.35


[124-150]:
1n2sa_PU9_124-150
CI=0.48


[151-192]:
1n2sa_PU9_151-192
CI=1.28


[193-213]:
1n2sa_PU9_193-213
CI=0.27


[214-230]:
1n2sa_PU9_214-230
CI=0.00


[231-249]:
1n2sa_PU9_231-249
CI=0.09


[250-265]:
1n2sa_PU9_250-265
CI=0.00


[266-282]:
1n2sa_PU9_266-282
CI=0.42


[283-298 ]:
1n2sa_PU9_283-298
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-28]:
1n2sa_PU_1-28
CI=2.03


[29-46]:
1n2sa_PU_29-46
CI=1.94


[47-62]:
1n2sa_PU_47-62
CI=0.00


[63-84]:
1n2sa_PU_63-84
CI=1.00


[85-107]:
1n2sa_PU_85-107
CI=0.47


[108-123]:
1n2sa_PU_108-123
CI=0.35


[124-150]:
1n2sa_PU_124-150
CI=0.48


[151-173]:
1n2sa_PU_151-173
CI=0.16


[174-192]:
1n2sa_PU_174-192
CI=0.00


[193-213]:
1n2sa_PU_193-213
CI=0.27


[214-230]:
1n2sa_PU_214-230
CI=0.00


[231-249]:
1n2sa_PU_231-249
CI=0.09


[250-265]:
1n2sa_PU_250-265
CI=0.00


[266-282]:
1n2sa_PU_266-282
CI=0.42


[283-298 ]:
1n2sa_PU_283-298
CI=0.00