Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-72]:
1n40a_PU0_1-72
CI=1.95


[73-237]:
1n40a_PU0_73-237
CI=1.79


[238-394 ]:
1n40a_PU0_238-394
CI=2.70


Level 1
PU
Molecule needs Java 1.4 Structure


[1-72]:
1n40a_PU1_1-72
CI=1.95


[73-237]:
1n40a_PU1_73-237
CI=1.79


[238-280]:
1n40a_PU1_238-280
CI=1.14


[281-305]:
1n40a_PU1_281-305
CI=2.73


[306-394 ]:
1n40a_PU1_306-394
CI=1.11


Level 2
PU
Molecule needs Java 1.4 Structure


[1-72]:
1n40a_PU2_1-72
CI=1.95


[73-237]:
1n40a_PU2_73-237
CI=1.79


[238-280]:
1n40a_PU2_238-280
CI=1.14


[281-305]:
1n40a_PU2_281-305
CI=2.73


[306-354]:
1n40a_PU2_306-354
CI=0.89


[355-394 ]:
1n40a_PU2_355-394
CI=1.34


Level 3
PU
Molecule needs Java 1.4 Structure


[1-72]:
1n40a_PU3_1-72
CI=1.95


[73-237]:
1n40a_PU3_73-237
CI=1.79


[238-280]:
1n40a_PU3_238-280
CI=1.14


[281-305]:
1n40a_PU3_281-305
CI=2.73


[306-335]:
1n40a_PU3_306-335
CI=0.88


[336-354]:
1n40a_PU3_336-354
CI=0.58


[355-394 ]:
1n40a_PU3_355-394
CI=1.34


Level 4
PU
Molecule needs Java 1.4 Structure


[1-72]:
1n40a_PU4_1-72
CI=1.95


[73-101]:
1n40a_PU4_73-101
CI=0.19


[102-139]:
1n40a_PU4_102-139
CI=0.35


[140-237]:
1n40a_PU4_140-237
CI=1.82


[238-280]:
1n40a_PU4_238-280
CI=1.14


[281-305]:
1n40a_PU4_281-305
CI=2.73


[306-335]:
1n40a_PU4_306-335
CI=0.88


[336-354]:
1n40a_PU4_336-354
CI=0.58


[355-394 ]:
1n40a_PU4_355-394
CI=1.34


Level 5
PU
Molecule needs Java 1.4 Structure


[1-52]:
1n40a_PU5_1-52
CI=2.18


[53-72]:
1n40a_PU5_53-72
CI=0.27


[73-101]:
1n40a_PU5_73-101
CI=0.19


[102-139]:
1n40a_PU5_102-139
CI=0.35


[140-237]:
1n40a_PU5_140-237
CI=1.82


[238-280]:
1n40a_PU5_238-280
CI=1.14


[281-305]:
1n40a_PU5_281-305
CI=2.73


[306-335]:
1n40a_PU5_306-335
CI=0.88


[336-354]:
1n40a_PU5_336-354
CI=0.58


[355-394 ]:
1n40a_PU5_355-394
CI=1.34


Level 6
PU
Molecule needs Java 1.4 Structure


[1-52]:
1n40a_PU6_1-52
CI=2.18


[53-72]:
1n40a_PU6_53-72
CI=0.27


[73-101]:
1n40a_PU6_73-101
CI=0.19


[102-139]:
1n40a_PU6_102-139
CI=0.35


[140-180]:
1n40a_PU6_140-180
CI=0.92


[181-226]:
1n40a_PU6_181-226
CI=1.23


[227-237]:
1n40a_PU6_227-237
CI=0.00


[238-280]:
1n40a_PU6_238-280
CI=1.14


[281-305]:
1n40a_PU6_281-305
CI=2.73


[306-335]:
1n40a_PU6_306-335
CI=0.88


[336-354]:
1n40a_PU6_336-354
CI=0.58


[355-394 ]:
1n40a_PU6_355-394
CI=1.34


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-52]:
1n40a_PU_1-52
CI=2.18


[53-72]:
1n40a_PU_53-72
CI=0.27


[73-101]:
1n40a_PU_73-101
CI=0.19


[102-139]:
1n40a_PU_102-139
CI=0.35


[140-160]:
1n40a_PU_140-160
CI=1.23


[161-180]:
1n40a_PU_161-180
CI=0.55


[181-226]:
1n40a_PU_181-226
CI=1.23


[227-237]:
1n40a_PU_227-237
CI=0.00


[238-280]:
1n40a_PU_238-280
CI=1.14


[281-305]:
1n40a_PU_281-305
CI=2.73


[306-335]:
1n40a_PU_306-335
CI=0.88


[336-354]:
1n40a_PU_336-354
CI=0.58


[355-394 ]:
1n40a_PU_355-394
CI=1.34