Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-125]:
1n57a_PU0_1-125
CI=3.38


[126-255]:
1n57a_PU0_126-255
CI=3.87


[256-272 ]:
1n57a_PU0_256-272
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-125]:
1n57a_PU1_1-125
CI=3.38


[126-204]:
1n57a_PU1_126-204
CI=2.85


[205-221]:
1n57a_PU1_205-221
CI=0.43


[222-255]:
1n57a_PU1_222-255
CI=1.57


[256-272 ]:
1n57a_PU1_256-272
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-26]:
1n57a_PU2_1-26
CI=2.19


[27-125]:
1n57a_PU2_27-125
CI=3.15


[126-204]:
1n57a_PU2_126-204
CI=2.85


[205-221]:
1n57a_PU2_205-221
CI=0.43


[222-255]:
1n57a_PU2_222-255
CI=1.57


[256-272 ]:
1n57a_PU2_256-272
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-26]:
1n57a_PU3_1-26
CI=2.19


[27-52]:
1n57a_PU3_27-52
CI=0.00


[53-68]:
1n57a_PU3_53-68
CI=2.09


[69-125]:
1n57a_PU3_69-125
CI=1.87


[126-204]:
1n57a_PU3_126-204
CI=2.85


[205-221]:
1n57a_PU3_205-221
CI=0.43


[222-255]:
1n57a_PU3_222-255
CI=1.57


[256-272 ]:
1n57a_PU3_256-272
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-26]:
1n57a_PU4_1-26
CI=2.19


[27-52]:
1n57a_PU4_27-52
CI=0.00


[53-68]:
1n57a_PU4_53-68
CI=2.09


[69-125]:
1n57a_PU4_69-125
CI=1.87


[126-204]:
1n57a_PU4_126-204
CI=2.85


[205-221]:
1n57a_PU4_205-221
CI=0.43


[222-238]:
1n57a_PU4_222-238
CI=0.10


[239-255]:
1n57a_PU4_239-255
CI=2.20


[256-272 ]:
1n57a_PU4_256-272
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-26]:
1n57a_PU5_1-26
CI=2.19


[27-52]:
1n57a_PU5_27-52
CI=0.00


[53-68]:
1n57a_PU5_53-68
CI=2.09


[69-86]:
1n57a_PU5_69-86
CI=0.10


[87-125]:
1n57a_PU5_87-125
CI=1.60


[126-204]:
1n57a_PU5_126-204
CI=2.85


[205-221]:
1n57a_PU5_205-221
CI=0.43


[222-238]:
1n57a_PU5_222-238
CI=0.10


[239-255]:
1n57a_PU5_239-255
CI=2.20


[256-272 ]:
1n57a_PU5_256-272
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-26]:
1n57a_PU6_1-26
CI=2.19


[27-52]:
1n57a_PU6_27-52
CI=0.00


[53-68]:
1n57a_PU6_53-68
CI=2.09


[69-86]:
1n57a_PU6_69-86
CI=0.10


[87-125]:
1n57a_PU6_87-125
CI=1.60


[126-174]:
1n57a_PU6_126-174
CI=1.13


[175-204]:
1n57a_PU6_175-204
CI=0.87


[205-221]:
1n57a_PU6_205-221
CI=0.43


[222-238]:
1n57a_PU6_222-238
CI=0.10


[239-255]:
1n57a_PU6_239-255
CI=2.20


[256-272 ]:
1n57a_PU6_256-272
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-26]:
1n57a_PU7_1-26
CI=2.19


[27-52]:
1n57a_PU7_27-52
CI=0.00


[53-68]:
1n57a_PU7_53-68
CI=2.09


[69-86]:
1n57a_PU7_69-86
CI=0.10


[87-125]:
1n57a_PU7_87-125
CI=1.60


[126-146]:
1n57a_PU7_126-146
CI=0.00


[147-174]:
1n57a_PU7_147-174
CI=0.26


[175-204]:
1n57a_PU7_175-204
CI=0.87


[205-221]:
1n57a_PU7_205-221
CI=0.43


[222-238]:
1n57a_PU7_222-238
CI=0.10


[239-255]:
1n57a_PU7_239-255
CI=2.20


[256-272 ]:
1n57a_PU7_256-272
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-26]:
1n57a_PU_1-26
CI=2.19


[27-52]:
1n57a_PU_27-52
CI=0.00


[53-68]:
1n57a_PU_53-68
CI=2.09


[69-86]:
1n57a_PU_69-86
CI=0.10


[87-103]:
1n57a_PU_87-103
CI=0.00


[104-125]:
1n57a_PU_104-125
CI=0.16


[126-146]:
1n57a_PU_126-146
CI=0.00


[147-174]:
1n57a_PU_147-174
CI=0.26


[175-204]:
1n57a_PU_175-204
CI=0.87


[205-221]:
1n57a_PU_205-221
CI=0.43


[222-238]:
1n57a_PU_222-238
CI=0.10


[239-255]:
1n57a_PU_239-255
CI=2.20


[256-272 ]:
1n57a_PU_256-272
CI=0.00