Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-77]:
1n62a_PU0_1-77
CI=4.44


[78-161 ]:
1n62a_PU0_78-161
CI=2.53


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1n62a_PU1_1-17
CI=2.40


[18-66]:
1n62a_PU1_18-66
CI=3.54


[67-77]:
1n62a_PU1_67-77
CI=0.00


[78-161 ]:
1n62a_PU1_78-161
CI=2.53


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1n62a_PU2_1-17
CI=2.40


[18-66]:
1n62a_PU2_18-66
CI=3.54


[67-77]:
1n62a_PU2_67-77
CI=0.00


[78-95]:
1n62a_PU2_78-95
CI=0.91


[96-144]:
1n62a_PU2_96-144
CI=1.35


[145-161 ]:
1n62a_PU2_145-161
CI=0.73


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1n62a_PU3_1-17
CI=2.40


[18-66]:
1n62a_PU3_18-66
CI=3.54


[67-77]:
1n62a_PU3_67-77
CI=0.00


[78-95]:
1n62a_PU3_78-95
CI=0.91


[96-120]:
1n62a_PU3_96-120
CI=0.15


[121-144]:
1n62a_PU3_121-144
CI=0.39


[145-161 ]:
1n62a_PU3_145-161
CI=0.73


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-17]:
1n62a_PU_1-17
CI=2.40


[18-35]:
1n62a_PU_18-35
CI=0.71


[36-66]:
1n62a_PU_36-66
CI=2.38


[67-77]:
1n62a_PU_67-77
CI=0.00


[78-95]:
1n62a_PU_78-95
CI=0.91


[96-120]:
1n62a_PU_96-120
CI=0.15


[121-144]:
1n62a_PU_121-144
CI=0.39


[145-161 ]:
1n62a_PU_145-161
CI=0.73