Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-174]:
1n8ka_PU0_1-174
CI=5.34


[175-321]:
1n8ka_PU0_175-321
CI=5.44


[322-374 ]:
1n8ka_PU0_322-374
CI=1.95


Level 1
PU
Molecule needs Java 1.4 Structure


[1-174]:
1n8ka_PU1_1-174
CI=5.34


[175-321]:
1n8ka_PU1_175-321
CI=5.44


[322-341]:
1n8ka_PU1_322-341
CI=0.19


[342-374 ]:
1n8ka_PU1_342-374
CI=2.92


Level 2
PU
Molecule needs Java 1.4 Structure


[1-95]:
1n8ka_PU2_1-95
CI=4.03


[96-113]:
1n8ka_PU2_96-113
CI=1.85


[114-174]:
1n8ka_PU2_114-174
CI=1.41


[175-321]:
1n8ka_PU2_175-321
CI=5.44


[322-341]:
1n8ka_PU2_322-341
CI=0.19


[342-374 ]:
1n8ka_PU2_342-374
CI=2.92


Level 3
PU
Molecule needs Java 1.4 Structure


[1-95]:
1n8ka_PU3_1-95
CI=4.03


[96-113]:
1n8ka_PU3_96-113
CI=1.85


[114-158]:
1n8ka_PU3_114-158
CI=1.90


[159-174]:
1n8ka_PU3_159-174
CI=0.00


[175-321]:
1n8ka_PU3_175-321
CI=5.44


[322-341]:
1n8ka_PU3_322-341
CI=0.19


[342-374 ]:
1n8ka_PU3_342-374
CI=2.92


Level 4
PU
Molecule needs Java 1.4 Structure


[1-30]:
1n8ka_PU4_1-30
CI=2.74


[31-95]:
1n8ka_PU4_31-95
CI=3.54


[96-113]:
1n8ka_PU4_96-113
CI=1.85


[114-158]:
1n8ka_PU4_114-158
CI=1.90


[159-174]:
1n8ka_PU4_159-174
CI=0.00


[175-321]:
1n8ka_PU4_175-321
CI=5.44


[322-341]:
1n8ka_PU4_322-341
CI=0.19


[342-374 ]:
1n8ka_PU4_342-374
CI=2.92


Level 5
PU
Molecule needs Java 1.4 Structure


[1-30]:
1n8ka_PU5_1-30
CI=2.74


[31-95]:
1n8ka_PU5_31-95
CI=3.54


[96-113]:
1n8ka_PU5_96-113
CI=1.85


[114-158]:
1n8ka_PU5_114-158
CI=1.90


[159-174]:
1n8ka_PU5_159-174
CI=0.00


[175-245]:
1n8ka_PU5_175-245
CI=4.43


[246-321]:
1n8ka_PU5_246-321
CI=3.83


[322-341]:
1n8ka_PU5_322-341
CI=0.19


[342-374 ]:
1n8ka_PU5_342-374
CI=2.92


Level 6
PU
Molecule needs Java 1.4 Structure


[1-30]:
1n8ka_PU6_1-30
CI=2.74


[31-95]:
1n8ka_PU6_31-95
CI=3.54


[96-113]:
1n8ka_PU6_96-113
CI=1.85


[114-158]:
1n8ka_PU6_114-158
CI=1.90


[159-174]:
1n8ka_PU6_159-174
CI=0.00


[175-245]:
1n8ka_PU6_175-245
CI=4.43


[246-262]:
1n8ka_PU6_246-262
CI=0.75


[263-321]:
1n8ka_PU6_263-321
CI=3.87


[322-341]:
1n8ka_PU6_322-341
CI=0.19


[342-374 ]:
1n8ka_PU6_342-374
CI=2.92


Level 7
PU
Molecule needs Java 1.4 Structure


[1-30]:
1n8ka_PU7_1-30
CI=2.74


[31-95]:
1n8ka_PU7_31-95
CI=3.54


[96-113]:
1n8ka_PU7_96-113
CI=1.85


[114-142]:
1n8ka_PU7_114-142
CI=1.94


[143-158]:
1n8ka_PU7_143-158
CI=0.79


[159-174]:
1n8ka_PU7_159-174
CI=0.00


[175-245]:
1n8ka_PU7_175-245
CI=4.43


[246-262]:
1n8ka_PU7_246-262
CI=0.75


[263-321]:
1n8ka_PU7_263-321
CI=3.87


[322-341]:
1n8ka_PU7_322-341
CI=0.19


[342-374 ]:
1n8ka_PU7_342-374
CI=2.92


Level 8
PU
Molecule needs Java 1.4 Structure


[1-30]:
1n8ka_PU8_1-30
CI=2.74


[31-95]:
1n8ka_PU8_31-95
CI=3.54


[96-113]:
1n8ka_PU8_96-113
CI=1.85


[114-142]:
1n8ka_PU8_114-142
CI=1.94


[143-158]:
1n8ka_PU8_143-158
CI=0.79


[159-174]:
1n8ka_PU8_159-174
CI=0.00


[175-221]:
1n8ka_PU8_175-221
CI=4.03


[222-245]:
1n8ka_PU8_222-245
CI=1.57


[246-262]:
1n8ka_PU8_246-262
CI=0.75


[263-321]:
1n8ka_PU8_263-321
CI=3.87


[322-341]:
1n8ka_PU8_322-341
CI=0.19


[342-374 ]:
1n8ka_PU8_342-374
CI=2.92


Level 9
PU
Molecule needs Java 1.4 Structure


[1-30]:
1n8ka_PU9_1-30
CI=2.74


[31-67]:
1n8ka_PU9_31-67
CI=1.12


[68-95]:
1n8ka_PU9_68-95
CI=1.97


[96-113]:
1n8ka_PU9_96-113
CI=1.85


[114-142]:
1n8ka_PU9_114-142
CI=1.94


[143-158]:
1n8ka_PU9_143-158
CI=0.79


[159-174]:
1n8ka_PU9_159-174
CI=0.00


[175-221]:
1n8ka_PU9_175-221
CI=4.03


[222-245]:
1n8ka_PU9_222-245
CI=1.57


[246-262]:
1n8ka_PU9_246-262
CI=0.75


[263-321]:
1n8ka_PU9_263-321
CI=3.87


[322-341]:
1n8ka_PU9_322-341
CI=0.19


[342-374 ]:
1n8ka_PU9_342-374
CI=2.92


Level 10
PU
Molecule needs Java 1.4 Structure


[1-30]:
1n8ka_PU10_1-30
CI=2.74


[31-67]:
1n8ka_PU10_31-67
CI=1.12


[68-95]:
1n8ka_PU10_68-95
CI=1.97


[96-113]:
1n8ka_PU10_96-113
CI=1.85


[114-142]:
1n8ka_PU10_114-142
CI=1.94


[143-158]:
1n8ka_PU10_143-158
CI=0.79


[159-174]:
1n8ka_PU10_159-174
CI=0.00


[175-221]:
1n8ka_PU10_175-221
CI=4.03


[222-245]:
1n8ka_PU10_222-245
CI=1.57


[246-262]:
1n8ka_PU10_246-262
CI=0.75


[263-302]:
1n8ka_PU10_263-302
CI=3.43


[303-321]:
1n8ka_PU10_303-321
CI=0.09


[322-341]:
1n8ka_PU10_322-341
CI=0.19


[342-374 ]:
1n8ka_PU10_342-374
CI=2.92


Level 11
PU
Molecule needs Java 1.4 Structure


[1-30]:
1n8ka_PU11_1-30
CI=2.74


[31-67]:
1n8ka_PU11_31-67
CI=1.12


[68-95]:
1n8ka_PU11_68-95
CI=1.97


[96-113]:
1n8ka_PU11_96-113
CI=1.85


[114-142]:
1n8ka_PU11_114-142
CI=1.94


[143-158]:
1n8ka_PU11_143-158
CI=0.79


[159-174]:
1n8ka_PU11_159-174
CI=0.00


[175-191]:
1n8ka_PU11_175-191
CI=0.22


[192-221]:
1n8ka_PU11_192-221
CI=2.26


[222-245]:
1n8ka_PU11_222-245
CI=1.57


[246-262]:
1n8ka_PU11_246-262
CI=0.75


[263-302]:
1n8ka_PU11_263-302
CI=3.43


[303-321]:
1n8ka_PU11_303-321
CI=0.09


[322-341]:
1n8ka_PU11_322-341
CI=0.19


[342-374 ]:
1n8ka_PU11_342-374
CI=2.92


Level 12
PU
Molecule needs Java 1.4 Structure


[1-30]:
1n8ka_PU12_1-30
CI=2.74


[31-67]:
1n8ka_PU12_31-67
CI=1.12


[68-95]:
1n8ka_PU12_68-95
CI=1.97


[96-113]:
1n8ka_PU12_96-113
CI=1.85


[114-142]:
1n8ka_PU12_114-142
CI=1.94


[143-158]:
1n8ka_PU12_143-158
CI=0.79


[159-174]:
1n8ka_PU12_159-174
CI=0.00


[175-191]:
1n8ka_PU12_175-191
CI=0.22


[192-221]:
1n8ka_PU12_192-221
CI=2.26


[222-245]:
1n8ka_PU12_222-245
CI=1.57


[246-262]:
1n8ka_PU12_246-262
CI=0.75


[263-302]:
1n8ka_PU12_263-302
CI=3.43


[303-321]:
1n8ka_PU12_303-321
CI=0.09


[322-341]:
1n8ka_PU12_322-341
CI=0.19


[342-358]:
1n8ka_PU12_342-358
CI=0.32


[359-374 ]:
1n8ka_PU12_359-374
CI=1.01


Final level 13

PU
Molecule needs Java 1.4 Structure


[1-30]:
1n8ka_PU_1-30
CI=2.74


[31-67]:
1n8ka_PU_31-67
CI=1.12


[68-95]:
1n8ka_PU_68-95
CI=1.97


[96-113]:
1n8ka_PU_96-113
CI=1.85


[114-142]:
1n8ka_PU_114-142
CI=1.94


[143-158]:
1n8ka_PU_143-158
CI=0.79


[159-174]:
1n8ka_PU_159-174
CI=0.00


[175-191]:
1n8ka_PU_175-191
CI=0.22


[192-221]:
1n8ka_PU_192-221
CI=2.26


[222-245]:
1n8ka_PU_222-245
CI=1.57


[246-262]:
1n8ka_PU_246-262
CI=0.75


[263-282]:
1n8ka_PU_263-282
CI=1.21


[283-302]:
1n8ka_PU_283-302
CI=0.00


[303-321]:
1n8ka_PU_303-321
CI=0.09


[322-341]:
1n8ka_PU_322-341
CI=0.19


[342-358]:
1n8ka_PU_342-358
CI=0.32


[359-374 ]:
1n8ka_PU_359-374
CI=1.01