Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-35]:
1na3a_PU0_1-35
CI=2.92


[36-86 ]:
1na3a_PU0_36-86
CI=3.34


Level 1
PU
Molecule needs Java 1.4 Structure


[1-35]:
1na3a_PU1_1-35
CI=2.92


[36-69]:
1na3a_PU1_36-69
CI=2.71


[70-86 ]:
1na3a_PU1_70-86
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-35]:
1na3a_PU2_1-35
CI=2.92


[36-53]:
1na3a_PU2_36-53
CI=0.10


[54-69]:
1na3a_PU2_54-69
CI=0.21


[70-86 ]:
1na3a_PU2_70-86
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-19]:
1na3a_PU_1-19
CI=0.00


[20-35]:
1na3a_PU_20-35
CI=0.00


[36-53]:
1na3a_PU_36-53
CI=0.10


[54-69]:
1na3a_PU_54-69
CI=0.21


[70-86 ]:
1na3a_PU_70-86
CI=0.00