Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-35]:
1nar0_PU0_1-35
CI=1.63


[36-185]:
1nar0_PU0_36-185
CI=3.99


[186-289 ]:
1nar0_PU0_186-289
CI=2.51


Level 1
PU
Molecule needs Java 1.4 Structure


[1-35]:
1nar0_PU1_1-35
CI=1.63


[36-185]:
1nar0_PU1_36-185
CI=3.99


[186-261]:
1nar0_PU1_186-261
CI=2.69


[262-289 ]:
1nar0_PU1_262-289
CI=0.73


Level 2
PU
Molecule needs Java 1.4 Structure


[1-35]:
1nar0_PU2_1-35
CI=1.63


[36-57]:
1nar0_PU2_36-57
CI=2.40


[58-77]:
1nar0_PU2_58-77
CI=0.18


[78-185]:
1nar0_PU2_78-185
CI=3.28


[186-261]:
1nar0_PU2_186-261
CI=2.69


[262-289 ]:
1nar0_PU2_262-289
CI=0.73


Level 3
PU
Molecule needs Java 1.4 Structure


[1-35]:
1nar0_PU3_1-35
CI=1.63


[36-57]:
1nar0_PU3_36-57
CI=2.40


[58-77]:
1nar0_PU3_58-77
CI=0.18


[78-94]:
1nar0_PU3_78-94
CI=0.41


[95-123]:
1nar0_PU3_95-123
CI=0.52


[124-185]:
1nar0_PU3_124-185
CI=2.47


[186-261]:
1nar0_PU3_186-261
CI=2.69


[262-289 ]:
1nar0_PU3_262-289
CI=0.73


Level 4
PU
Molecule needs Java 1.4 Structure


[1-35]:
1nar0_PU4_1-35
CI=1.63


[36-57]:
1nar0_PU4_36-57
CI=2.40


[58-77]:
1nar0_PU4_58-77
CI=0.18


[78-94]:
1nar0_PU4_78-94
CI=0.41


[95-123]:
1nar0_PU4_95-123
CI=0.52


[124-142]:
1nar0_PU4_124-142
CI=0.09


[143-159]:
1nar0_PU4_143-159
CI=0.54


[160-185]:
1nar0_PU4_160-185
CI=0.72


[186-261]:
1nar0_PU4_186-261
CI=2.69


[262-289 ]:
1nar0_PU4_262-289
CI=0.73


Level 5
PU
Molecule needs Java 1.4 Structure


[1-35]:
1nar0_PU5_1-35
CI=1.63


[36-57]:
1nar0_PU5_36-57
CI=2.40


[58-77]:
1nar0_PU5_58-77
CI=0.18


[78-94]:
1nar0_PU5_78-94
CI=0.41


[95-123]:
1nar0_PU5_95-123
CI=0.52


[124-142]:
1nar0_PU5_124-142
CI=0.09


[143-159]:
1nar0_PU5_143-159
CI=0.54


[160-185]:
1nar0_PU5_160-185
CI=0.72


[186-202]:
1nar0_PU5_186-202
CI=0.00


[203-218]:
1nar0_PU5_203-218
CI=0.00


[219-261]:
1nar0_PU5_219-261
CI=1.41


[262-289 ]:
1nar0_PU5_262-289
CI=0.73


Level 6
PU
Molecule needs Java 1.4 Structure


[1-35]:
1nar0_PU6_1-35
CI=1.63


[36-57]:
1nar0_PU6_36-57
CI=2.40


[58-77]:
1nar0_PU6_58-77
CI=0.18


[78-94]:
1nar0_PU6_78-94
CI=0.41


[95-123]:
1nar0_PU6_95-123
CI=0.52


[124-142]:
1nar0_PU6_124-142
CI=0.09


[143-159]:
1nar0_PU6_143-159
CI=0.54


[160-185]:
1nar0_PU6_160-185
CI=0.72


[186-202]:
1nar0_PU6_186-202
CI=0.00


[203-218]:
1nar0_PU6_203-218
CI=0.00


[219-238]:
1nar0_PU6_219-238
CI=0.18


[239-261]:
1nar0_PU6_239-261
CI=0.16


[262-289 ]:
1nar0_PU6_262-289
CI=0.73


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-19]:
1nar0_PU_1-19
CI=0.00


[20-35]:
1nar0_PU_20-35
CI=0.34


[36-57]:
1nar0_PU_36-57
CI=2.40


[58-77]:
1nar0_PU_58-77
CI=0.18


[78-94]:
1nar0_PU_78-94
CI=0.41


[95-123]:
1nar0_PU_95-123
CI=0.52


[124-142]:
1nar0_PU_124-142
CI=0.09


[143-159]:
1nar0_PU_143-159
CI=0.54


[160-185]:
1nar0_PU_160-185
CI=0.72


[186-202]:
1nar0_PU_186-202
CI=0.00


[203-218]:
1nar0_PU_203-218
CI=0.00


[219-238]:
1nar0_PU_219-238
CI=0.18


[239-261]:
1nar0_PU_239-261
CI=0.16


[262-289 ]:
1nar0_PU_262-289
CI=0.73