Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-26]:
1nbca_PU0_1-26
CI=2.70


[27-119]:
1nbca_PU0_27-119
CI=4.55


[120-155 ]:
1nbca_PU0_120-155
CI=1.90


Level 1
PU
Molecule needs Java 1.4 Structure


[1-26]:
1nbca_PU1_1-26
CI=2.70


[27-119]:
1nbca_PU1_27-119
CI=4.55


[120-136]:
1nbca_PU1_120-136
CI=0.21


[137-155 ]:
1nbca_PU1_137-155
CI=2.36


Level 2
PU
Molecule needs Java 1.4 Structure


[1-26]:
1nbca_PU2_1-26
CI=2.70


[27-54]:
1nbca_PU2_27-54
CI=0.00


[55-74]:
1nbca_PU2_55-74
CI=2.33


[75-119]:
1nbca_PU2_75-119
CI=1.40


[120-136]:
1nbca_PU2_120-136
CI=0.21


[137-155 ]:
1nbca_PU2_137-155
CI=2.36


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-26]:
1nbca_PU_1-26
CI=2.70


[27-54]:
1nbca_PU_27-54
CI=0.00


[55-74]:
1nbca_PU_55-74
CI=2.33


[75-98]:
1nbca_PU_75-98
CI=2.43


[99-119]:
1nbca_PU_99-119
CI=0.09


[120-136]:
1nbca_PU_120-136
CI=0.21


[137-155 ]:
1nbca_PU_137-155
CI=2.36