Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-36]:
1nbua_PU0_1-36
CI=3.09


[37-52]:
1nbua_PU0_37-52
CI=0.69


[53-118 ]:
1nbua_PU0_53-118
CI=2.74


Level 1
PU
Molecule needs Java 1.4 Structure


[1-36]:
1nbua_PU1_1-36
CI=3.09


[37-52]:
1nbua_PU1_37-52
CI=0.69


[53-70]:
1nbua_PU1_53-70
CI=0.00


[71-118 ]:
1nbua_PU1_71-118
CI=3.12


Level 2
PU
Molecule needs Java 1.4 Structure


[1-36]:
1nbua_PU2_1-36
CI=3.09


[37-52]:
1nbua_PU2_37-52
CI=0.69


[53-70]:
1nbua_PU2_53-70
CI=0.00


[71-96]:
1nbua_PU2_71-96
CI=1.23


[97-118 ]:
1nbua_PU2_97-118
CI=1.45


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1nbua_PU_1-17
CI=0.00


[18-36]:
1nbua_PU_18-36
CI=0.00


[37-52]:
1nbua_PU_37-52
CI=0.69


[53-70]:
1nbua_PU_53-70
CI=0.00


[71-96]:
1nbua_PU_71-96
CI=1.23


[97-118 ]:
1nbua_PU_97-118
CI=1.45