Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-42]:
1nepa_PU0_1-42
CI=2.50


[43-94]:
1nepa_PU0_43-94
CI=3.59


[95-130 ]:
1nepa_PU0_95-130
CI=2.77


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1nepa_PU1_1-20
CI=1.22


[21-42]:
1nepa_PU1_21-42
CI=1.01


[43-94]:
1nepa_PU1_43-94
CI=3.59


[95-130 ]:
1nepa_PU1_95-130
CI=2.77


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1nepa_PU2_1-20
CI=1.22


[21-42]:
1nepa_PU2_21-42
CI=1.01


[43-67]:
1nepa_PU2_43-67
CI=1.28


[68-94]:
1nepa_PU2_68-94
CI=1.95


[95-130 ]:
1nepa_PU2_95-130
CI=2.77


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-20]:
1nepa_PU_1-20
CI=1.22


[21-42]:
1nepa_PU_21-42
CI=1.01


[43-67]:
1nepa_PU_43-67
CI=1.28


[68-94]:
1nepa_PU_68-94
CI=1.95


[95-111]:
1nepa_PU_95-111
CI=0.00


[112-130 ]:
1nepa_PU_112-130
CI=0.40