Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-29]:
1neu0_PU0_1-29
CI=1.70


[30-85]:
1neu0_PU0_30-85
CI=3.37


[86-115 ]:
1neu0_PU0_86-115
CI=2.48


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-29]:
1neu0_PU_1-29
CI=1.70


[30-59]:
1neu0_PU_30-59
CI=2.73


[60-85]:
1neu0_PU_60-85
CI=2.17


[86-115 ]:
1neu0_PU_86-115
CI=2.48