Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-82]:
1nfva_PU0_1-82
CI=2.68


[83-154]:
1nfva_PU0_83-154
CI=1.46


[155-169 ]:
1nfva_PU0_155-169
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-82]:
1nfva_PU1_1-82
CI=2.68


[83-99]:
1nfva_PU1_83-99
CI=0.00


[100-127]:
1nfva_PU1_100-127
CI=1.74


[128-154]:
1nfva_PU1_128-154
CI=0.28


[155-169 ]:
1nfva_PU1_155-169
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-26]:
1nfva_PU2_1-26
CI=0.00


[27-49]:
1nfva_PU2_27-49
CI=1.61


[50-82]:
1nfva_PU2_50-82
CI=0.45


[83-99]:
1nfva_PU2_83-99
CI=0.00


[100-127]:
1nfva_PU2_100-127
CI=1.74


[128-154]:
1nfva_PU2_128-154
CI=0.28


[155-169 ]:
1nfva_PU2_155-169
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-26]:
1nfva_PU_1-26
CI=0.00


[27-49]:
1nfva_PU_27-49
CI=1.61


[50-66]:
1nfva_PU_50-66
CI=0.10


[67-82]:
1nfva_PU_67-82
CI=0.00


[83-99]:
1nfva_PU_83-99
CI=0.00


[100-127]:
1nfva_PU_100-127
CI=1.74


[128-154]:
1nfva_PU_128-154
CI=0.28


[155-169 ]:
1nfva_PU_155-169
CI=0.00