Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-40]:
1nh0a_PU0_1-40
CI=1.44


[41-58]:
1nh0a_PU0_41-58
CI=2.29


[59-99 ]:
1nh0a_PU0_59-99
CI=2.18


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1nh0a_PU1_1-24
CI=1.74


[25-40]:
1nh0a_PU1_25-40
CI=0.11


[41-58]:
1nh0a_PU1_41-58
CI=2.29


[59-99 ]:
1nh0a_PU1_59-99
CI=2.18


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-24]:
1nh0a_PU_1-24
CI=1.74


[25-40]:
1nh0a_PU_25-40
CI=0.11


[41-58]:
1nh0a_PU_41-58
CI=2.29


[59-77]:
1nh0a_PU_59-77
CI=2.66


[78-99 ]:
1nh0a_PU_78-99
CI=0.16