Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-44]:
1nh9a_PU0_1-44
CI=2.48


[45-80 ]:
1nh9a_PU0_45-80
CI=2.70


Level 1
PU
Molecule needs Java 1.4 Structure


[1-44]:
1nh9a_PU1_1-44
CI=2.48


[45-61]:
1nh9a_PU1_45-61
CI=0.74


[62-80 ]:
1nh9a_PU1_62-80
CI=1.68


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-26]:
1nh9a_PU_1-26
CI=0.51


[27-44]:
1nh9a_PU_27-44
CI=0.82


[45-61]:
1nh9a_PU_45-61
CI=0.74


[62-80 ]:
1nh9a_PU_62-80
CI=1.68