Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-18]:
1niga_PU0_1-18
CI=1.88


[19-146 ]:
1niga_PU0_19-146
CI=2.87


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1niga_PU1_1-18
CI=1.88


[19-80]:
1niga_PU1_19-80
CI=0.85


[81-96]:
1niga_PU1_81-96
CI=0.34


[97-146 ]:
1niga_PU1_97-146
CI=1.55


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1niga_PU2_1-18
CI=1.88


[19-64]:
1niga_PU2_19-64
CI=0.82


[65-80]:
1niga_PU2_65-80
CI=0.00


[81-96]:
1niga_PU2_81-96
CI=0.34


[97-146 ]:
1niga_PU2_97-146
CI=1.55


Level 3
PU
Molecule needs Java 1.4 Structure


[1-18]:
1niga_PU3_1-18
CI=1.88


[19-44]:
1niga_PU3_19-44
CI=0.07


[45-64]:
1niga_PU3_45-64
CI=0.27


[65-80]:
1niga_PU3_65-80
CI=0.00


[81-96]:
1niga_PU3_81-96
CI=0.34


[97-146 ]:
1niga_PU3_97-146
CI=1.55


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-18]:
1niga_PU_1-18
CI=1.88


[19-44]:
1niga_PU_19-44
CI=0.07


[45-64]:
1niga_PU_45-64
CI=0.27


[65-80]:
1niga_PU_65-80
CI=0.00


[81-96]:
1niga_PU_81-96
CI=0.34


[97-125]:
1niga_PU_97-125
CI=0.51


[126-146 ]:
1niga_PU_126-146
CI=0.00