Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-200]:
1nija_PU0_1-200
CI=4.13


[201-317 ]:
1nija_PU0_201-317
CI=3.98


Level 1
PU
Molecule needs Java 1.4 Structure


[1-25]:
1nija_PU1_1-25
CI=0.00


[26-90]:
1nija_PU1_26-90
CI=3.05


[91-200]:
1nija_PU1_91-200
CI=2.79


[201-317 ]:
1nija_PU1_201-317
CI=3.98


Level 2
PU
Molecule needs Java 1.4 Structure


[1-25]:
1nija_PU2_1-25
CI=0.00


[26-90]:
1nija_PU2_26-90
CI=3.05


[91-106]:
1nija_PU2_91-106
CI=0.34


[107-122]:
1nija_PU2_107-122
CI=1.03


[123-200]:
1nija_PU2_123-200
CI=3.22


[201-317 ]:
1nija_PU2_201-317
CI=3.98


Level 3
PU
Molecule needs Java 1.4 Structure


[1-25]:
1nija_PU3_1-25
CI=0.00


[26-70]:
1nija_PU3_26-70
CI=3.33


[71-90]:
1nija_PU3_71-90
CI=0.46


[91-106]:
1nija_PU3_91-106
CI=0.34


[107-122]:
1nija_PU3_107-122
CI=1.03


[123-200]:
1nija_PU3_123-200
CI=3.22


[201-317 ]:
1nija_PU3_201-317
CI=3.98


Level 4
PU
Molecule needs Java 1.4 Structure


[1-25]:
1nija_PU4_1-25
CI=0.00


[26-70]:
1nija_PU4_26-70
CI=3.33


[71-90]:
1nija_PU4_71-90
CI=0.46


[91-106]:
1nija_PU4_91-106
CI=0.34


[107-122]:
1nija_PU4_107-122
CI=1.03


[123-200]:
1nija_PU4_123-200
CI=3.22


[201-234]:
1nija_PU4_201-234
CI=0.22


[235-252]:
1nija_PU4_235-252
CI=0.00


[253-317 ]:
1nija_PU4_253-317
CI=3.39


Level 5
PU
Molecule needs Java 1.4 Structure


[1-25]:
1nija_PU5_1-25
CI=0.00


[26-70]:
1nija_PU5_26-70
CI=3.33


[71-90]:
1nija_PU5_71-90
CI=0.46


[91-106]:
1nija_PU5_91-106
CI=0.34


[107-122]:
1nija_PU5_107-122
CI=1.03


[123-200]:
1nija_PU5_123-200
CI=3.22


[201-234]:
1nija_PU5_201-234
CI=0.22


[235-252]:
1nija_PU5_235-252
CI=0.00


[253-301]:
1nija_PU5_253-301
CI=4.37


[302-317 ]:
1nija_PU5_302-317
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-25]:
1nija_PU6_1-25
CI=0.00


[26-70]:
1nija_PU6_26-70
CI=3.33


[71-90]:
1nija_PU6_71-90
CI=0.46


[91-106]:
1nija_PU6_91-106
CI=0.34


[107-122]:
1nija_PU6_107-122
CI=1.03


[123-183]:
1nija_PU6_123-183
CI=3.18


[184-200]:
1nija_PU6_184-200
CI=0.00


[201-234]:
1nija_PU6_201-234
CI=0.22


[235-252]:
1nija_PU6_235-252
CI=0.00


[253-301]:
1nija_PU6_253-301
CI=4.37


[302-317 ]:
1nija_PU6_302-317
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-25]:
1nija_PU7_1-25
CI=0.00


[26-70]:
1nija_PU7_26-70
CI=3.33


[71-90]:
1nija_PU7_71-90
CI=0.46


[91-106]:
1nija_PU7_91-106
CI=0.34


[107-122]:
1nija_PU7_107-122
CI=1.03


[123-157]:
1nija_PU7_123-157
CI=2.40


[158-183]:
1nija_PU7_158-183
CI=0.42


[184-200]:
1nija_PU7_184-200
CI=0.00


[201-234]:
1nija_PU7_201-234
CI=0.22


[235-252]:
1nija_PU7_235-252
CI=0.00


[253-301]:
1nija_PU7_253-301
CI=4.37


[302-317 ]:
1nija_PU7_302-317
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-25]:
1nija_PU8_1-25
CI=0.00


[26-42]:
1nija_PU8_26-42
CI=0.00


[43-70]:
1nija_PU8_43-70
CI=2.71


[71-90]:
1nija_PU8_71-90
CI=0.46


[91-106]:
1nija_PU8_91-106
CI=0.34


[107-122]:
1nija_PU8_107-122
CI=1.03


[123-157]:
1nija_PU8_123-157
CI=2.40


[158-183]:
1nija_PU8_158-183
CI=0.42


[184-200]:
1nija_PU8_184-200
CI=0.00


[201-234]:
1nija_PU8_201-234
CI=0.22


[235-252]:
1nija_PU8_235-252
CI=0.00


[253-301]:
1nija_PU8_253-301
CI=4.37


[302-317 ]:
1nija_PU8_302-317
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-25]:
1nija_PU9_1-25
CI=0.00


[26-42]:
1nija_PU9_26-42
CI=0.00


[43-70]:
1nija_PU9_43-70
CI=2.71


[71-90]:
1nija_PU9_71-90
CI=0.46


[91-106]:
1nija_PU9_91-106
CI=0.34


[107-122]:
1nija_PU9_107-122
CI=1.03


[123-157]:
1nija_PU9_123-157
CI=2.40


[158-183]:
1nija_PU9_158-183
CI=0.42


[184-200]:
1nija_PU9_184-200
CI=0.00


[201-234]:
1nija_PU9_201-234
CI=0.22


[235-252]:
1nija_PU9_235-252
CI=0.00


[253-285]:
1nija_PU9_253-285
CI=3.48


[286-301]:
1nija_PU9_286-301
CI=0.11


[302-317 ]:
1nija_PU9_302-317
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-25]:
1nija_PU_1-25
CI=0.00


[26-42]:
1nija_PU_26-42
CI=0.00


[43-70]:
1nija_PU_43-70
CI=2.71


[71-90]:
1nija_PU_71-90
CI=0.46


[91-106]:
1nija_PU_91-106
CI=0.34


[107-122]:
1nija_PU_107-122
CI=1.03


[123-140]:
1nija_PU_123-140
CI=0.00


[141-157]:
1nija_PU_141-157
CI=0.11


[158-183]:
1nija_PU_158-183
CI=0.42


[184-200]:
1nija_PU_184-200
CI=0.00


[201-234]:
1nija_PU_201-234
CI=0.22


[235-252]:
1nija_PU_235-252
CI=0.00


[253-285]:
1nija_PU_253-285
CI=3.48


[286-301]:
1nija_PU_286-301
CI=0.11


[302-317 ]:
1nija_PU_302-317
CI=0.00