Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-37]:
1nlqa_PU0_1-37
CI=0.49


[38-72]:
1nlqa_PU0_38-72
CI=2.78


[73-105 ]:
1nlqa_PU0_73-105
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1nlqa_PU1_1-17
CI=0.43


[18-37]:
1nlqa_PU1_18-37
CI=0.26


[38-72]:
1nlqa_PU1_38-72
CI=2.78


[73-105 ]:
1nlqa_PU1_73-105
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1nlqa_PU2_1-17
CI=0.43


[18-37]:
1nlqa_PU2_18-37
CI=0.26


[38-72]:
1nlqa_PU2_38-72
CI=2.78


[73-89]:
1nlqa_PU2_73-89
CI=0.00


[90-105 ]:
1nlqa_PU2_90-105
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1nlqa_PU_1-17
CI=0.43


[18-37]:
1nlqa_PU_18-37
CI=0.26


[38-56]:
1nlqa_PU_38-56
CI=0.00


[57-72]:
1nlqa_PU_57-72
CI=0.23


[73-89]:
1nlqa_PU_73-89
CI=0.00


[90-105 ]:
1nlqa_PU_90-105
CI=0.00