Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-101]:
1nnfa_PU0_1-101
CI=2.67


[102-223]:
1nnfa_PU0_102-223
CI=3.67


[224-308 ]:
1nnfa_PU0_224-308
CI=1.39


Level 1
PU
Molecule needs Java 1.4 Structure


[1-101]:
1nnfa_PU1_1-101
CI=2.67


[102-223]:
1nnfa_PU1_102-223
CI=3.67


[224-288]:
1nnfa_PU1_224-288
CI=1.81


[289-308 ]:
1nnfa_PU1_289-308
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-71]:
1nnfa_PU2_1-71
CI=2.80


[72-101]:
1nnfa_PU2_72-101
CI=1.62


[102-223]:
1nnfa_PU2_102-223
CI=3.67


[224-288]:
1nnfa_PU2_224-288
CI=1.81


[289-308 ]:
1nnfa_PU2_289-308
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-71]:
1nnfa_PU3_1-71
CI=2.80


[72-101]:
1nnfa_PU3_72-101
CI=1.62


[102-223]:
1nnfa_PU3_102-223
CI=3.67


[224-249]:
1nnfa_PU3_224-249
CI=0.57


[250-288]:
1nnfa_PU3_250-288
CI=2.12


[289-308 ]:
1nnfa_PU3_289-308
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-71]:
1nnfa_PU4_1-71
CI=2.80


[72-101]:
1nnfa_PU4_72-101
CI=1.62


[102-142]:
1nnfa_PU4_102-142
CI=0.54


[143-163]:
1nnfa_PU4_143-163
CI=0.78


[164-223]:
1nnfa_PU4_164-223
CI=1.11


[224-249]:
1nnfa_PU4_224-249
CI=0.57


[250-288]:
1nnfa_PU4_250-288
CI=2.12


[289-308 ]:
1nnfa_PU4_289-308
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-71]:
1nnfa_PU5_1-71
CI=2.80


[72-101]:
1nnfa_PU5_72-101
CI=1.62


[102-142]:
1nnfa_PU5_102-142
CI=0.54


[143-163]:
1nnfa_PU5_143-163
CI=0.78


[164-192]:
1nnfa_PU5_164-192
CI=1.03


[193-223]:
1nnfa_PU5_193-223
CI=0.61


[224-249]:
1nnfa_PU5_224-249
CI=0.57


[250-288]:
1nnfa_PU5_250-288
CI=2.12


[289-308 ]:
1nnfa_PU5_289-308
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-71]:
1nnfa_PU6_1-71
CI=2.80


[72-101]:
1nnfa_PU6_72-101
CI=1.62


[102-118]:
1nnfa_PU6_102-118
CI=0.31


[119-142]:
1nnfa_PU6_119-142
CI=0.31


[143-163]:
1nnfa_PU6_143-163
CI=0.78


[164-192]:
1nnfa_PU6_164-192
CI=1.03


[193-223]:
1nnfa_PU6_193-223
CI=0.61


[224-249]:
1nnfa_PU6_224-249
CI=0.57


[250-288]:
1nnfa_PU6_250-288
CI=2.12


[289-308 ]:
1nnfa_PU6_289-308
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-33]:
1nnfa_PU7_1-33
CI=2.60


[34-71]:
1nnfa_PU7_34-71
CI=0.98


[72-101]:
1nnfa_PU7_72-101
CI=1.62


[102-118]:
1nnfa_PU7_102-118
CI=0.31


[119-142]:
1nnfa_PU7_119-142
CI=0.31


[143-163]:
1nnfa_PU7_143-163
CI=0.78


[164-192]:
1nnfa_PU7_164-192
CI=1.03


[193-223]:
1nnfa_PU7_193-223
CI=0.61


[224-249]:
1nnfa_PU7_224-249
CI=0.57


[250-288]:
1nnfa_PU7_250-288
CI=2.12


[289-308 ]:
1nnfa_PU7_289-308
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-33]:
1nnfa_PU8_1-33
CI=2.60


[34-55]:
1nnfa_PU8_34-55
CI=0.40


[56-71]:
1nnfa_PU8_56-71
CI=0.11


[72-101]:
1nnfa_PU8_72-101
CI=1.62


[102-118]:
1nnfa_PU8_102-118
CI=0.31


[119-142]:
1nnfa_PU8_119-142
CI=0.31


[143-163]:
1nnfa_PU8_143-163
CI=0.78


[164-192]:
1nnfa_PU8_164-192
CI=1.03


[193-223]:
1nnfa_PU8_193-223
CI=0.61


[224-249]:
1nnfa_PU8_224-249
CI=0.57


[250-288]:
1nnfa_PU8_250-288
CI=2.12


[289-308 ]:
1nnfa_PU8_289-308
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-33]:
1nnfa_PU9_1-33
CI=2.60


[34-55]:
1nnfa_PU9_34-55
CI=0.40


[56-71]:
1nnfa_PU9_56-71
CI=0.11


[72-101]:
1nnfa_PU9_72-101
CI=1.62


[102-118]:
1nnfa_PU9_102-118
CI=0.31


[119-142]:
1nnfa_PU9_119-142
CI=0.31


[143-163]:
1nnfa_PU9_143-163
CI=0.78


[164-192]:
1nnfa_PU9_164-192
CI=1.03


[193-223]:
1nnfa_PU9_193-223
CI=0.61


[224-249]:
1nnfa_PU9_224-249
CI=0.57


[250-272]:
1nnfa_PU9_250-272
CI=1.45


[273-288]:
1nnfa_PU9_273-288
CI=0.00


[289-308 ]:
1nnfa_PU9_289-308
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-17]:
1nnfa_PU_1-17
CI=0.21


[18-33]:
1nnfa_PU_18-33
CI=0.80


[34-55]:
1nnfa_PU_34-55
CI=0.40


[56-71]:
1nnfa_PU_56-71
CI=0.11


[72-101]:
1nnfa_PU_72-101
CI=1.62


[102-118]:
1nnfa_PU_102-118
CI=0.31


[119-142]:
1nnfa_PU_119-142
CI=0.31


[143-163]:
1nnfa_PU_143-163
CI=0.78


[164-192]:
1nnfa_PU_164-192
CI=1.03


[193-223]:
1nnfa_PU_193-223
CI=0.61


[224-249]:
1nnfa_PU_224-249
CI=0.57


[250-272]:
1nnfa_PU_250-272
CI=1.45


[273-288]:
1nnfa_PU_273-288
CI=0.00


[289-308 ]:
1nnfa_PU_289-308
CI=0.00