Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-119]:
1nnha_PU0_1-119
CI=2.83


[120-262]:
1nnha_PU0_120-262
CI=3.48


[263-293 ]:
1nnha_PU0_263-293
CI=1.22


Level 1
PU
Molecule needs Java 1.4 Structure


[1-23]:
1nnha_PU1_1-23
CI=0.00


[24-119]:
1nnha_PU1_24-119
CI=3.51


[120-262]:
1nnha_PU1_120-262
CI=3.48


[263-293 ]:
1nnha_PU1_263-293
CI=1.22


Level 2
PU
Molecule needs Java 1.4 Structure


[1-23]:
1nnha_PU2_1-23
CI=0.00


[24-119]:
1nnha_PU2_24-119
CI=3.51


[120-221]:
1nnha_PU2_120-221
CI=3.29


[222-254]:
1nnha_PU2_222-254
CI=0.97


[255-262]:
1nnha_PU2_255-262
CI=0.00


[263-293 ]:
1nnha_PU2_263-293
CI=1.22


Level 3
PU
Molecule needs Java 1.4 Structure


[1-23]:
1nnha_PU3_1-23
CI=0.00


[24-119]:
1nnha_PU3_24-119
CI=3.51


[120-156]:
1nnha_PU3_120-156
CI=0.66


[157-221]:
1nnha_PU3_157-221
CI=4.31


[222-254]:
1nnha_PU3_222-254
CI=0.97


[255-262]:
1nnha_PU3_255-262
CI=0.00


[263-293 ]:
1nnha_PU3_263-293
CI=1.22


Level 4
PU
Molecule needs Java 1.4 Structure


[1-23]:
1nnha_PU4_1-23
CI=0.00


[24-119]:
1nnha_PU4_24-119
CI=3.51


[120-136]:
1nnha_PU4_120-136
CI=0.00


[137-156]:
1nnha_PU4_137-156
CI=0.83


[157-221]:
1nnha_PU4_157-221
CI=4.31


[222-254]:
1nnha_PU4_222-254
CI=0.97


[255-262]:
1nnha_PU4_255-262
CI=0.00


[263-293 ]:
1nnha_PU4_263-293
CI=1.22


Level 5
PU
Molecule needs Java 1.4 Structure


[1-23]:
1nnha_PU5_1-23
CI=0.00


[24-39]:
1nnha_PU5_24-39
CI=0.33


[40-73]:
1nnha_PU5_40-73
CI=2.59


[74-119]:
1nnha_PU5_74-119
CI=2.54


[120-136]:
1nnha_PU5_120-136
CI=0.00


[137-156]:
1nnha_PU5_137-156
CI=0.83


[157-221]:
1nnha_PU5_157-221
CI=4.31


[222-254]:
1nnha_PU5_222-254
CI=0.97


[255-262]:
1nnha_PU5_255-262
CI=0.00


[263-293 ]:
1nnha_PU5_263-293
CI=1.22


Level 6
PU
Molecule needs Java 1.4 Structure


[1-23]:
1nnha_PU6_1-23
CI=0.00


[24-39]:
1nnha_PU6_24-39
CI=0.33


[40-73]:
1nnha_PU6_40-73
CI=2.59


[74-119]:
1nnha_PU6_74-119
CI=2.54


[120-136]:
1nnha_PU6_120-136
CI=0.00


[137-156]:
1nnha_PU6_137-156
CI=0.83


[157-221]:
1nnha_PU6_157-221
CI=4.31


[222-238]:
1nnha_PU6_222-238
CI=0.21


[239-254]:
1nnha_PU6_239-254
CI=0.12


[255-262]:
1nnha_PU6_255-262
CI=0.00


[263-293 ]:
1nnha_PU6_263-293
CI=1.22


Level 7
PU
Molecule needs Java 1.4 Structure


[1-23]:
1nnha_PU7_1-23
CI=0.00


[24-39]:
1nnha_PU7_24-39
CI=0.33


[40-73]:
1nnha_PU7_40-73
CI=2.59


[74-119]:
1nnha_PU7_74-119
CI=2.54


[120-136]:
1nnha_PU7_120-136
CI=0.00


[137-156]:
1nnha_PU7_137-156
CI=0.83


[157-185]:
1nnha_PU7_157-185
CI=1.49


[186-221]:
1nnha_PU7_186-221
CI=3.40


[222-238]:
1nnha_PU7_222-238
CI=0.21


[239-254]:
1nnha_PU7_239-254
CI=0.12


[255-262]:
1nnha_PU7_255-262
CI=0.00


[263-293 ]:
1nnha_PU7_263-293
CI=1.22


Level 8
PU
Molecule needs Java 1.4 Structure


[1-23]:
1nnha_PU8_1-23
CI=0.00


[24-39]:
1nnha_PU8_24-39
CI=0.33


[40-73]:
1nnha_PU8_40-73
CI=2.59


[74-96]:
1nnha_PU8_74-96
CI=0.80


[97-119]:
1nnha_PU8_97-119
CI=0.73


[120-136]:
1nnha_PU8_120-136
CI=0.00


[137-156]:
1nnha_PU8_137-156
CI=0.83


[157-185]:
1nnha_PU8_157-185
CI=1.49


[186-221]:
1nnha_PU8_186-221
CI=3.40


[222-238]:
1nnha_PU8_222-238
CI=0.21


[239-254]:
1nnha_PU8_239-254
CI=0.12


[255-262]:
1nnha_PU8_255-262
CI=0.00


[263-293 ]:
1nnha_PU8_263-293
CI=1.22


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-23]:
1nnha_PU_1-23
CI=0.00


[24-39]:
1nnha_PU_24-39
CI=0.33


[40-57]:
1nnha_PU_40-57
CI=0.72


[58-73]:
1nnha_PU_58-73
CI=1.51


[74-96]:
1nnha_PU_74-96
CI=0.80


[97-119]:
1nnha_PU_97-119
CI=0.73


[120-136]:
1nnha_PU_120-136
CI=0.00


[137-156]:
1nnha_PU_137-156
CI=0.83


[157-185]:
1nnha_PU_157-185
CI=1.49


[186-221]:
1nnha_PU_186-221
CI=3.40


[222-238]:
1nnha_PU_222-238
CI=0.21


[239-254]:
1nnha_PU_239-254
CI=0.12


[255-262]:
1nnha_PU_255-262
CI=0.00


[263-293 ]:
1nnha_PU_263-293
CI=1.22