Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-52]:
1no5a_PU0_1-52
CI=1.84


[53-68]:
1no5a_PU0_53-68
CI=0.00


[69-100 ]:
1no5a_PU0_69-100
CI=0.06


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-22]:
1no5a_PU_1-22
CI=0.00


[23-52]:
1no5a_PU_23-52
CI=2.27


[53-68]:
1no5a_PU_53-68
CI=0.00


[69-100 ]:
1no5a_PU_69-100
CI=0.06