Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-47]:
1nofa_PU0_1-47
CI=1.18


[48-223]:
1nofa_PU0_48-223
CI=3.85


[224-383 ]:
1nofa_PU0_224-383
CI=4.46


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1nofa_PU1_1-19
CI=0.00


[20-47]:
1nofa_PU1_20-47
CI=1.56


[48-223]:
1nofa_PU1_48-223
CI=3.85


[224-383 ]:
1nofa_PU1_224-383
CI=4.46


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1nofa_PU2_1-19
CI=0.00


[20-47]:
1nofa_PU2_20-47
CI=1.56


[48-147]:
1nofa_PU2_48-147
CI=3.35


[148-223]:
1nofa_PU2_148-223
CI=3.23


[224-383 ]:
1nofa_PU2_224-383
CI=4.46


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1nofa_PU3_1-19
CI=0.00


[20-47]:
1nofa_PU3_20-47
CI=1.56


[48-147]:
1nofa_PU3_48-147
CI=3.35


[148-223]:
1nofa_PU3_148-223
CI=3.23


[224-281]:
1nofa_PU3_224-281
CI=2.85


[282-383 ]:
1nofa_PU3_282-383
CI=4.54


Level 4
PU
Molecule needs Java 1.4 Structure


[1-19]:
1nofa_PU4_1-19
CI=0.00


[20-47]:
1nofa_PU4_20-47
CI=1.56


[48-147]:
1nofa_PU4_48-147
CI=3.35


[148-223]:
1nofa_PU4_148-223
CI=3.23


[224-281]:
1nofa_PU4_224-281
CI=2.85


[282-322]:
1nofa_PU4_282-322
CI=2.95


[323-383 ]:
1nofa_PU4_323-383
CI=4.09


Level 5
PU
Molecule needs Java 1.4 Structure


[1-19]:
1nofa_PU5_1-19
CI=0.00


[20-47]:
1nofa_PU5_20-47
CI=1.56


[48-147]:
1nofa_PU5_48-147
CI=3.35


[148-223]:
1nofa_PU5_148-223
CI=3.23


[224-240]:
1nofa_PU5_224-240
CI=0.63


[241-259]:
1nofa_PU5_241-259
CI=0.58


[260-281]:
1nofa_PU5_260-281
CI=2.06


[282-322]:
1nofa_PU5_282-322
CI=2.95


[323-383 ]:
1nofa_PU5_323-383
CI=4.09


Level 6
PU
Molecule needs Java 1.4 Structure


[1-19]:
1nofa_PU6_1-19
CI=0.00


[20-47]:
1nofa_PU6_20-47
CI=1.56


[48-84]:
1nofa_PU6_48-84
CI=2.22


[85-111]:
1nofa_PU6_85-111
CI=1.74


[112-147]:
1nofa_PU6_112-147
CI=1.15


[148-223]:
1nofa_PU6_148-223
CI=3.23


[224-240]:
1nofa_PU6_224-240
CI=0.63


[241-259]:
1nofa_PU6_241-259
CI=0.58


[260-281]:
1nofa_PU6_260-281
CI=2.06


[282-322]:
1nofa_PU6_282-322
CI=2.95


[323-383 ]:
1nofa_PU6_323-383
CI=4.09


Level 7
PU
Molecule needs Java 1.4 Structure


[1-19]:
1nofa_PU7_1-19
CI=0.00


[20-47]:
1nofa_PU7_20-47
CI=1.56


[48-84]:
1nofa_PU7_48-84
CI=2.22


[85-111]:
1nofa_PU7_85-111
CI=1.74


[112-131]:
1nofa_PU7_112-131
CI=0.55


[132-147]:
1nofa_PU7_132-147
CI=1.83


[148-223]:
1nofa_PU7_148-223
CI=3.23


[224-240]:
1nofa_PU7_224-240
CI=0.63


[241-259]:
1nofa_PU7_241-259
CI=0.58


[260-281]:
1nofa_PU7_260-281
CI=2.06


[282-322]:
1nofa_PU7_282-322
CI=2.95


[323-383 ]:
1nofa_PU7_323-383
CI=4.09


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-19]:
1nofa_PU_1-19
CI=0.00


[20-47]:
1nofa_PU_20-47
CI=1.56


[48-84]:
1nofa_PU_48-84
CI=2.22


[85-111]:
1nofa_PU_85-111
CI=1.74


[112-131]:
1nofa_PU_112-131
CI=0.55


[132-147]:
1nofa_PU_132-147
CI=1.83


[148-165]:
1nofa_PU_148-165
CI=0.00


[166-223]:
1nofa_PU_166-223
CI=3.23


[224-240]:
1nofa_PU_224-240
CI=0.63


[241-259]:
1nofa_PU_241-259
CI=0.58


[260-281]:
1nofa_PU_260-281
CI=2.06


[282-322]:
1nofa_PU_282-322
CI=2.95


[323-383 ]:
1nofa_PU_323-383
CI=4.09