Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-40]:
1npk0_PU0_1-40
CI=0.47


[41-70]:
1npk0_PU0_41-70
CI=2.01


[71-150 ]:
1npk0_PU0_71-150
CI=2.09


Level 1
PU
Molecule needs Java 1.4 Structure


[1-40]:
1npk0_PU1_1-40
CI=0.47


[41-70]:
1npk0_PU1_41-70
CI=2.01


[71-133]:
1npk0_PU1_71-133
CI=2.65


[134-150 ]:
1npk0_PU1_134-150
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-40]:
1npk0_PU2_1-40
CI=0.47


[41-70]:
1npk0_PU2_41-70
CI=2.01


[71-90]:
1npk0_PU2_71-90
CI=0.09


[91-117]:
1npk0_PU2_91-117
CI=3.50


[118-133]:
1npk0_PU2_118-133
CI=0.34


[134-150 ]:
1npk0_PU2_134-150
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-23]:
1npk0_PU_1-23
CI=0.32


[24-40]:
1npk0_PU_24-40
CI=0.53


[41-70]:
1npk0_PU_41-70
CI=2.01


[71-90]:
1npk0_PU_71-90
CI=0.09


[91-117]:
1npk0_PU_91-117
CI=3.50


[118-133]:
1npk0_PU_118-133
CI=0.34


[134-150 ]:
1npk0_PU_134-150
CI=0.00